View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2805_low_22 (Length: 243)
Name: NF2805_low_22
Description: NF2805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2805_low_22 |
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| [»] scaffold0472 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 5 - 238
Target Start/End: Original strand, 14289767 - 14290001
Alignment:
| Q |
5 |
tcgcatcaaagttttcgcgattttgactgtcacggatgttgtgatgcatattacggttatcacggtgtgaattaatcaaaacattgtataaatgttatta |
104 |
Q |
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| T |
14289767 |
tcgcgtcaaagtttttgcgatttcgactgtcacggatgttgtgatgcatattacggttatcgcggtgtgaattaatcaaaacattgtataaatgttatta |
14289866 |
T |
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| Q |
105 |
aaattatttatattgtcatacattggatagtaactttaattaagtaatttaaataaaaaattataaattcaaatatctattt-tttcactcacaacaaca |
203 |
Q |
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| T |
14289867 |
aaattatttatattgtcatacatctgataataactttaattaagtaatttaaataaaaaattataaattcaaatatctatttctttcactcacaacaact |
14289966 |
T |
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| Q |
204 |
cctcggccacccaatttctctcactttcccttttc |
238 |
Q |
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| T |
14289967 |
cctcggccacccaatttctctcactttcccttttc |
14290001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 2718834 - 2718755
Alignment:
| Q |
68 |
ggtgtgaattaatcaaaacattgtataaatgttattaaaattatttatattgtcatacattggatagtaactttaattaa |
147 |
Q |
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| T |
2718834 |
ggtgtgaattaatcacaacctttcacaaatattattaaaattatttatattatcatataatgtataataacttcaattaa |
2718755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 9771953 - 9771913
Alignment:
| Q |
70 |
tgtgaattaatcaaaacattgtataaatgttattaaaatta |
110 |
Q |
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| T |
9771953 |
tgtgaattaatcacaacattgcacaaatgttattaaaatta |
9771913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 42237512 - 42237643
Alignment:
| Q |
15 |
gttttcgcgattttgactgtcacggatgttgtgatgcatattacggttatcacggtgtgaattaatcaaaacattgtataaatgttattaaaattattta |
114 |
Q |
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| T |
42237512 |
gttttcgtgatttcggttgtaacggatgttgcgatacaaataacggtcttcgcggtgtgaattaaccacaacattgcacaaatcttattaaaattattta |
42237611 |
T |
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| Q |
115 |
tattgtcatacattggatagtaactttaatta |
146 |
Q |
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| T |
42237612 |
tattatcaaacaatgtataataacttaaatta |
42237643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 35451070 - 35451121
Alignment:
| Q |
67 |
cggtgtgaattaatcaaaacattgtataaatgttattaaaattatttatatt |
118 |
Q |
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| T |
35451070 |
cggtgtgaattaatcacaacattgtacgaattttattaaaattatttgtatt |
35451121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0472 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0472
Description:
Target: scaffold0472; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 11808 - 11857
Alignment:
| Q |
68 |
ggtgtgaattaatcaaaacattgtataaatgttattaaaattatttatat |
117 |
Q |
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| T |
11808 |
ggtgtgaattaaccacaacattgcacaaatcttattaaaattatttatat |
11857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 36491665 - 36491629
Alignment:
| Q |
54 |
attacggttatcacggtgtgaattaatcaaaacattg |
90 |
Q |
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| T |
36491665 |
attacggttgtcacggtgtgaattaatcataacattg |
36491629 |
T |
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