View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2805_low_23 (Length: 222)
Name: NF2805_low_23
Description: NF2805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2805_low_23 |
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| [»] scaffold0618 (1 HSPs) |
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Alignment Details
Target: scaffold0618 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: scaffold0618
Description:
Target: scaffold0618; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 24 - 191
Target Start/End: Complemental strand, 7391 - 7224
Alignment:
| Q |
24 |
aattcaactctgaaatgaatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaatcaccagccaaaaaattaccaacagaaa |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7391 |
aattcaactctgaaatgaatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaatcaccagccaaaaaattaccaacagaaa |
7292 |
T |
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| Q |
124 |
atttaactgcatcagaaggattagtaataacatgaaaaccaggccatttaactcttccatcagtatta |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7291 |
atttaactgcatcagaaggattagtaataacatgaaaaccaggccatttaactcttccatcagtatta |
7224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 24 - 191
Target Start/End: Original strand, 44092520 - 44092687
Alignment:
| Q |
24 |
aattcaactctgaaatgaatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaatcaccagccaaaaaattaccaacagaaa |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44092520 |
aattcaactctgaaatgaatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaatcaccagccaaaaaattaccaacagaaa |
44092619 |
T |
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| Q |
124 |
atttaactgcatcagaaggattagtaataacatgaaaaccaggccatttaactcttccatcagtatta |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44092620 |
atttaactgcatcagaaggattagtaataacatgaaaaccaggccatttaactcttccatcagtatta |
44092687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 41 - 191
Target Start/End: Complemental strand, 44088073 - 44087923
Alignment:
| Q |
41 |
aatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaatcaccagccaaaaaattaccaacagaaaatttaactgcatcagaa |
140 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44088073 |
aatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaatcaccagccaaaaaattaccaacagaaaatttaactgcatcagaa |
44087974 |
T |
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| Q |
141 |
ggattagtaataacatgaaaaccaggccatttaactcttccatcagtatta |
191 |
Q |
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| T |
44087973 |
ggattagtaataacatgaaaaccaggccatttaactcttccatcagtatta |
44087923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 41 - 191
Target Start/End: Original strand, 44067036 - 44067186
Alignment:
| Q |
41 |
aatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaatcaccagccaaaaaattaccaacagaaaatttaactgcatcagaa |
140 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44067036 |
aatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaatcaccagccaaaaaattaccaacagaaaatttaactgcatctgaa |
44067135 |
T |
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| Q |
141 |
ggattagtaataacatgaaaaccaggccatttaactcttccatcagtatta |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44067136 |
ggattagtaataacatgaaaaccaggccatttaactcttccatcagtatta |
44067186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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