View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2805_low_4 (Length: 495)

Name: NF2805_low_4
Description: NF2805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2805_low_4
NF2805_low_4
[»] chr3 (2 HSPs)
chr3 (1-487)||(53567090-53567576)
chr3 (306-437)||(52736137-52736268)
[»] chr7 (4 HSPs)
chr7 (193-409)||(37149105-37149321)
chr7 (252-490)||(4227810-4228046)
chr7 (193-436)||(38493553-38493796)
chr7 (293-412)||(16066371-16066489)
[»] chr2 (5 HSPs)
chr2 (193-409)||(37532320-37532536)
chr2 (252-455)||(42771215-42771416)
chr2 (252-419)||(26806877-26807044)
chr2 (387-455)||(11006292-11006358)
chr2 (304-356)||(11006505-11006557)
[»] chr4 (2 HSPs)
chr4 (245-463)||(20231368-20231584)
chr4 (312-437)||(1594098-1594223)
[»] chr5 (3 HSPs)
chr5 (285-436)||(43153122-43153272)
chr5 (387-436)||(3748420-3748469)
chr5 (387-490)||(19204583-19204685)
[»] chr6 (1 HSPs)
chr6 (193-436)||(3606295-3606537)
[»] chr1 (1 HSPs)
chr1 (387-490)||(7765866-7765968)


Alignment Details
Target: chr3 (Bit Score: 475; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Original strand, 53567090 - 53567576
Alignment:
Q  1 ataatacatcacatataaaagattaatagtttgtctctataaatttaactcggttgatagagacattacaaaatatatgtatggcttgtactccaacatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  53567090 ataatacatcacatataaaagattaatagtttgtctctataaatttaactcggttgacagagacattacaaaatatatgtatggcttgtactccaacatt 53567189  T
Q  101 ccacttattcaccttaaaaggtgggccagttgcgcacagatacattggatggtcaacaaccactgcaatgtaaaatatgatttcatccattaagtctatg 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53567190 ccacttattcaccttaaaaggtgggccagttgcgcgcagatacattggatggtcaacaaccactgcaatgtaaaatatgatttcatccattaagtctatg 53567289  T
Q  201 tttggatacccggtggaaacaatcaaacgtacgtccttcccatgaaacgcgatttcaatatgtttggttctctgccaatactctaccgacgccgtaagtt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53567290 tttggatacccggtggaaacaatcaaacgtacgtccttcccatgaaacgcgatttcaatatgtttggttctctgccaatactctaccgacgccgtaagtt 53567389  T
Q  301 tccatcttcagaattgattcttagagaagctgctattcctagcttcttgaaatcgagtttctcaaccacggaagtacatagtaccgatttgtctcttttg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53567390 tccatcttcagaattgattcttagagaagctgctattcctagcttcttgaaatcgagtttctcaaccacggaagtacatagtaccgatttgtctcttttg 53567489  T
Q  401 cccttgagtctcatcacttcatttcacatcccttttttatattggacaaatccctccacctaccttcgaaatccgtggcttcatctc 487  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  53567490 cccttgagtctcatcacttcatttcacatcccttttttatattggacaaatccctccacctaccttcgaaatccgtggctccatctc 53567576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 437
Target Start/End: Original strand, 52736137 - 52736268
Alignment:
Q  306 cttcagaattgattcttagagaagctgctattcctagcttcttgaaatcgagtttctcaaccacggaagtacatagtaccgatttgtctcttttgccctt 405  Q
    ||||||||| |||| ||| |||||||||| |  |||||||||||||||||| | | || ||| | ||||||||||  | | | ||||||||||| ||| |    
T  52736137 cttcagaatcgatttttaaagaagctgctctctctagcttcttgaaatcgattctttccaccgcagaagtacatatcatccaattgtctcttttacccct 52736236  T
Q  406 gagtctcatcacttcatttcacatcccttttt 437  Q
    || |||||||| ||  ||||| || |||||||    
T  52736237 gaatctcatcagtttctttcatataccttttt 52736268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 193 - 409
Target Start/End: Complemental strand, 37149321 - 37149105
Alignment:
Q  193 agtctatgtttggatacccggtggaaacaatcaaacgtacgtccttcccatgaaacgcgatttcaatatgtttggttctctgccaatactctaccgacgc 292  Q
    ||||| ||||||||||||||||||||||||||||| |  ||| ||  |||| ||||| | ||| || ||||||||||||| ||| | |||| |||| ||     
T  37149321 agtctgtgtttggatacccggtggaaacaatcaaaagcgcgttctgtccatcaaacgtggttttaacatgtttggttctccgccgacactccaccgccgt 37149222  T
Q  293 cgtaagtttccatcttcagaattgattcttagagaagctgctattcctagcttcttgaaatcgagtttctcaaccacggaagtacatagtaccgatttgt 392  Q
    |||| |||||||| |||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||  ||  | |||||||| ||||||||||||    
T  37149221 cgtacgtttccattttcaaaattgatttttagagaagctgctattcctagcttctagaaatcgagtttctctgccgtgaaagtacatggtaccgatttgt 37149122  T
Q  393 ctcttttgcccttgagt 409  Q
    | |||||||||||||||    
T  37149121 cgcttttgcccttgagt 37149105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 252 - 490
Target Start/End: Original strand, 4227810 - 4228046
Alignment:
Q  252 atttcaatatgtttggttctctgccaatactctaccgacgccgtaagtttccatcttcagaattgattcttagagaagctgctattcctagcttcttgaa 351  Q
    |||||||  ||||||||| ||  |||| ||| ||||| |  ||||||||| | | |||||||| ||||  || |||||||||| | |||||||| ||| |    
T  4227810 atttcaaggtgtttggttatccaccaacactataccgccatcgtaagtttgcgttttcagaatcgatttgtacagaagctgctttccctagctttttgga 4227909  T
Q  352 atcgagtttctcaaccacggaagtacatagtaccgatttgtctcttttgcccttgagtctcatcacttcatttcacatcccttttttatattggacaaat 451  Q
    |||||||||| | |||  | ||||||||||  || ||||||||||||| ||||||| |||||||||||  ||||||||  | | |||||||| |||||||    
T  4227910 atcgagtttccctaccgtgaaagtacatagcccc-atttgtctcttttacccttgaatctcatcactttttttcacatatc-tgtttatatttgacaaat 4228007  T
Q  452 ccctccacctaccttcgaaatccgtggcttcatctcact 490  Q
    ||||||| |||| |  ||||||| |  ||||||||||||    
T  4228008 ccctccagctacatgagaaatcctttacttcatctcact 4228046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 193 - 436
Target Start/End: Original strand, 38493553 - 38493796
Alignment:
Q  193 agtctatgtttggatacccggtggaaacaatcaaacgtacgtccttcc-catgaaacgcgatttcaatatgtttggttctctgccaatactctaccgacg 291  Q
    ||||||||||||| | |||||||  ||||  ||||||  |||||| || ||| ||||| |||||  || ||||||||||||  |||| ||| | ||| ||    
T  38493553 agtctatgtttggttgcccggtgacaacacccaaacgcgcgtcctacctcatcaaacgggattttgatgtgtttggttctccaccaacactgtgccgccg 38493652  T
Q  292 ccgtaagtttccatcttcagaattgattcttagagaagctgctattcctagcttcttgaaatcgagtttctcaaccacggaagtacatagtaccgatttg 391  Q
     |||  ||||| ||||||||||| ||||||||| ||||||||| ||| |||| | || ||||||| | ||||  |   |||| ||||||| | | |||||    
T  38493653 tcgtgcgtttc-atcttcagaatcgattcttagtgaagctgctcttcttagccttttcaaatcgattctctctgctgtggaaatacataggatccatttg 38493751  T
Q  392 tctcttttgcccttgagtctcatcacttcatttcacatccctttt 436  Q
    |||||||| ||||||| ||||| |||||| |||||||| ||||||    
T  38493752 tctcttttacccttgaatctcaacacttcctttcacatacctttt 38493796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 412
Target Start/End: Original strand, 16066371 - 16066489
Alignment:
Q  293 cgtaagtttccatcttcagaattgattcttagagaagctgctattcctagcttcttgaaatcgagtttctcaaccacggaagtacatagtaccgatttgt 392  Q
    |||| |||||||| |||| ||| |||| | | ||||||||| ||||||||||||||||||| |||| |||  |||  ||||| ||| | |||| ||||||    
T  16066371 cgtatgtttccatgttcaaaatcgattatgaaagaagctgcaattcctagcttcttgaaattgagtctctttaccgaggaagcacacaatacc-atttgt 16066469  T
Q  393 ctcttttgcccttgagtctc 412  Q
     | | |||||||||||||||    
T  16066470 ttatgttgcccttgagtctc 16066489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 193 - 409
Target Start/End: Complemental strand, 37532536 - 37532320
Alignment:
Q  193 agtctatgtttggatacccggtggaaacaatcaaacgtacgtccttcccatgaaacgcgatttcaatatgtttggttctctgccaatactctaccgacgc 292  Q
    ||||| ||||||||||||||||||||||||||||| |  ||| ||  |||| ||||| | ||| || ||||||||||||| ||| | |||| |||| |      
T  37532536 agtctgtgtttggatacccggtggaaacaatcaaaagcgcgttctgtccatcaaacgtggttttaacatgtttggttctcggccgacactccaccgccat 37532437  T
Q  293 cgtaagtttccatcttcagaattgattcttagagaagctgctattcctagcttcttgaaatcgagtttctcaaccacggaagtacatagtaccgatttgt 392  Q
    |||| |||||||| ||||||||  ||| |||||||| |||||||||||||||||| |||||| ||||||||  ||  | |||||||| ||||||||||||    
T  37532436 cgtacgtttccattttcagaatccatttttagagaaactgctattcctagcttctagaaatcaagtttctctgccgtgaaagtacatggtaccgatttgt 37532337  T
Q  393 ctcttttgcccttgagt 409  Q
    | ||||| | |||||||    
T  37532336 cgctttttcgcttgagt 37532320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 455
Target Start/End: Complemental strand, 42771416 - 42771215
Alignment:
Q  252 atttcaatatgtttggttctctgccaatactctaccgacgccgtaagtttccatcttcagaattgattcttagagaagctgctattcctagcttcttgaa 351  Q
    |||||||  ||||||||| ||  |||||||| |||||  |  |||||||| | | |||||||| || |  || |||||||||| | |||||||| ||| |    
T  42771416 atttcaaggtgtttggttatccaccaatactataccgcggttgtaagtttgcgttttcagaatcgagttgtatagaagctgctctccctagctttttgga 42771317  T
Q  352 atcgagtttctcaaccacggaagtacatagtaccgatttgtctcttttgcccttgagtctcatcacttcatttcacatcccttttttatattggacaaat 451  Q
    ||| |||||| | |||  | ||||||||||| || ||||||||||||| ||||||| |||||||||||  ||||||||  | | |||||||| |||||||    
T  42771316 atctagtttccctaccgtgaaagtacatagtccc-atttgtctcttttacccttgaatctcatcactttttttcacatatc-tgtttatatttgacaaat 42771219  T
Q  452 ccct 455  Q
    ||||    
T  42771218 ccct 42771215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 419
Target Start/End: Complemental strand, 26807044 - 26806877
Alignment:
Q  252 atttcaatatgtttggttctctgccaatactctaccgac-gccgtaagtttccatcttcagaattgattcttagagaagctgctattcctagcttcttga 350  Q
    |||||||  ||||||||| ||  |||| ||||||||| | |||||| |||| ||| |||||||| ||||  || |||| ||||| | |||||||| |||     
T  26807044 atttcaaggtgtttggttatccaccaacactctaccgcccgccgtacgtttgcattttcagaatcgatttgtatagaaactgctctccctagctttttgg 26806945  T
Q  351 aatcgagtttctcaaccacggaagtacatagtaccgatttgtctcttttgcccttgagtctcatcactt 419  Q
    ||| ||||||| | |||  | ||||||||||  || ||||||||||||| ||||||| |||||||||||    
T  26806944 aattgagtttccctaccgtgaaagtacatagc-cctatttgtctcttttacccttgaatctcatcactt 26806877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 455
Target Start/End: Complemental strand, 11006358 - 11006292
Alignment:
Q  387 atttgtctcttttgcccttgagtctcatcacttcatttcacatcccttttttatattggacaaatccct 455  Q
    ||||||||||||||||||||  |||||||||||  |||||||| |  |||||||||| || ||||||||    
T  11006358 atttgtctcttttgcccttggttctcatcacttattttcacattc--tttttatatttgaaaaatccct 11006292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 356
Target Start/End: Original strand, 11006505 - 11006557
Alignment:
Q  304 atcttcagaattgattcttagagaagctgctattcctagcttcttgaaatcga 356  Q
    |||||||||||| ||| || | |||| |||| |||||||||||||||||||||    
T  11006505 atcttcagaattaattttttgtgaaggtgctcttcctagcttcttgaaatcga 11006557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 245 - 463
Target Start/End: Original strand, 20231368 - 20231584
Alignment:
Q  245 aaacgcgatttcaatatgtttggttctctgccaatactctaccgacgccgtaagtttccatcttcagaattgattcttagagaagctgctattcctagct 344  Q
    |||||||||||||| || ||||||||||  || | ||||||||| || |||| |||||||| |||| |||||||| | | | |||  |||||||||| ||    
T  20231368 aaacgcgatttcaacatttttggttctcctcccacactctaccgtcgtcgtacgtttccatattcaaaattgattatgaaataagtggctattcctaact 20231467  T
Q  345 tcttgaaatcgagtttctcaaccacggaagtacatagtaccgatttgtctcttttgcccttgagtctcatcacttcatttcacatcccttttttatattg 444  Q
    ||||||||| |||| |||| |||||  ||| ||| |  ||| |||||||| ||||||||||||||||||||| ||| ||||||||  | | ||||||||     
T  20231468 tcttgaaattgagtctctctaccacataagcacacaacacc-atttgtctattttgcccttgagtctcatcagttcctttcacataac-tctttatattt 20231565  T
Q  445 gacaaatccctccacctac 463  Q
    |||||||| || |||||||    
T  20231566 gacaaatctcttcacctac 20231584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 312 - 437
Target Start/End: Complemental strand, 1594223 - 1594098
Alignment:
Q  312 aattgattcttagagaagctgctattcctagcttcttgaaatcgagtttctcaaccacggaagtacatagtaccgatttgtctcttttgcccttgagtct 411  Q
    |||||||||||  |||||||||| ||| |||||| ||||||| ||||||| | |||   ||| |||| |  | |  |||||| ||||||||||||| |||    
T  1594223 aattgattcttccagaagctgctcttcttagctttttgaaattgagtttccctaccttagaaatacacaacatctgtttgtcccttttgcccttgaatct 1594124  T
Q  412 catcacttcatttcacatcccttttt 437  Q
    ||||||||| |||||||  |||||||    
T  1594123 catcacttcctttcacaaaccttttt 1594098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 285 - 436
Target Start/End: Complemental strand, 43153272 - 43153122
Alignment:
Q  285 accgacgccgtaagtttccatcttcagaattgattcttagagaagctgctattcctagcttcttgaaatcgagtttctcaaccacggaagtacatagtac 384  Q
    |||| ||||||| |||| |||| ||| ||| ||||||| ||||||||||| | |||||||||||| |||||||||| ||||   | |||||||||| ||     
T  43153272 accgccgccgtacgttttcatcctcaaaatcgattcttggagaagctgctctccctagcttcttggaatcgagtttatcaaaagcagaagtacata-taa 43153174  T
Q  385 cgatttgtctcttttgcccttgagtctcatcacttcatttcacatccctttt 436  Q
    | ||||||||||||| ||||||| ||| || ||||| |||||||| ||||||    
T  43153173 ccatttgtctcttttacccttgaatcttattacttcctttcacatacctttt 43153122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 436
Target Start/End: Original strand, 3748420 - 3748469
Alignment:
Q  387 atttgtctcttttgcccttgagtctcatcacttcatttcacatccctttt 436  Q
    ||||||||||||||||||||| ||||| |||||| |||||||| ||||||    
T  3748420 atttgtctcttttgcccttgaatctcaacacttcctttcacatacctttt 3748469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 490
Target Start/End: Complemental strand, 19204685 - 19204583
Alignment:
Q  387 atttgtctcttttgcccttgagtctcatcacttcatttcacatcccttttttatattggacaaatccctccacctaccttcgaaatccgtggcttcatct 486  Q
    ||||||||||||| ||||||| |||||||||||  ||||||||  | |||||| ||| ||||||||||| |  |||| |  ||||| ||| |||||||||    
T  19204685 atttgtctcttttacccttgaatctcatcactttctttcacatatc-tttttaaatttgacaaatccctaccgctacatgagaaattcgttgcttcatct 19204587  T
Q  487 cact 490  Q
    ||||    
T  19204586 cact 19204583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 193 - 436
Target Start/End: Complemental strand, 3606537 - 3606295
Alignment:
Q  193 agtctatgtttggatacccggtggaaacaatcaaacgtacgtccttcccatgaaacgcgatttcaatatgtttggttctctgccaatactctaccgacgc 292  Q
    ||||||||||||| | | ||| | ||||| | ||||| |||||||   | ||||||| ||||||| | ||||||||| ||  ||||  |  ||||| | |    
T  3606537 agtctatgtttggttgcacggcgaaaacacttaaacgcacgtcctattcctgaaacgtgatttcactgtgtttggttttcctccaacgccttaccgccac 3606438  T
Q  293 cgtaagtttccatcttcagaattgattcttagagaagctgctattcctagcttcttgaaatcgagtttctcaaccacggaagtacatagtaccgatttgt 392  Q
    | || |||| ||||| || ||| ||||||| ||||||||||| | |||||||||||||||||| || | || | |  | ||||||| |  ||| ||||||    
T  3606437 catacgttttcatctacaaaatcgattcttggagaagctgctctccctagcttcttgaaatcgtgtctatccaacgtgaaagtacacaacacc-atttgt 3606339  T
Q  393 ctcttttgcccttgagtctcatcacttcatttcacatccctttt 436  Q
    ||||||| ||||||| |||  ||||||| |||||||| ||||||    
T  3606338 ctcttttacccttgaatcttgtcacttcctttcacatacctttt 3606295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 490
Target Start/End: Complemental strand, 7765968 - 7765866
Alignment:
Q  387 atttgtctcttttgcccttgagtctcatcacttcatttcacatcccttttttatattggacaaatccctccacctaccttcgaaatccgtggcttcatct 486  Q
    ||||||||||||| ||||||| |||||||||||  ||||||||  | |||||| ||| ||||||||||| |  |||| |  ||||| ||| |||||||||    
T  7765968 atttgtctcttttacccttgaatctcatcactttctttcacatatc-tttttaaatttgacaaatccctaccgctacatgagaaattcgttgcttcatct 7765870  T
Q  487 cact 490  Q
    ||||    
T  7765869 cact 7765866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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