View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2805_low_6 (Length: 463)

Name: NF2805_low_6
Description: NF2805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2805_low_6
NF2805_low_6
[»] chr8 (10 HSPs)
chr8 (198-463)||(31734321-31734585)
chr8 (13-129)||(31734658-31734774)
chr8 (349-463)||(22573140-22573254)
chr8 (354-461)||(556786-556895)
chr8 (354-463)||(9028635-9028744)
chr8 (366-449)||(11066502-11066585)
chr8 (351-462)||(39283713-39283824)
chr8 (366-463)||(32889956-32890053)
chr8 (366-463)||(40028827-40028924)
chr8 (366-463)||(38503855-38503951)
[»] chr4 (14 HSPs)
chr4 (349-463)||(45413766-45413880)
chr4 (13-124)||(2183594-2183706)
chr4 (352-463)||(2183300-2183411)
chr4 (13-129)||(45413422-45413539)
chr4 (350-463)||(36625533-36625646)
chr4 (352-459)||(26635260-26635367)
chr4 (349-447)||(34666430-34666528)
chr4 (361-462)||(19181421-19181522)
chr4 (367-459)||(42964462-42964552)
chr4 (354-459)||(44126013-44126118)
chr4 (354-463)||(55945653-55945762)
chr4 (355-463)||(33451328-33451436)
chr4 (349-463)||(43481302-43481414)
chr4 (354-400)||(35320693-35320739)
[»] chr1 (18 HSPs)
chr1 (268-463)||(6768267-6768466)
chr1 (7-129)||(6768554-6768677)
chr1 (349-462)||(9383223-9383336)
chr1 (355-454)||(19806758-19806857)
chr1 (349-463)||(26793762-26793876)
chr1 (347-461)||(4076340-4076454)
chr1 (366-461)||(50004909-50005004)
chr1 (366-461)||(4950198-4950292)
chr1 (349-437)||(42471969-42472057)
chr1 (355-462)||(49236173-49236280)
chr1 (359-454)||(7904161-7904256)
chr1 (359-454)||(8002685-8002780)
chr1 (366-459)||(45792691-45792784)
chr1 (354-400)||(49288051-49288097)
chr1 (358-399)||(7902048-7902089)
chr1 (358-399)||(7905498-7905539)
chr1 (422-463)||(42472062-42472103)
chr1 (415-459)||(49288006-49288050)
[»] chr2 (8 HSPs)
chr2 (349-463)||(6457603-6457717)
chr2 (349-461)||(40626476-40626588)
chr2 (13-129)||(6457878-6457996)
chr2 (349-462)||(40054459-40054572)
chr2 (350-460)||(6452471-6452581)
chr2 (366-463)||(18665165-18665262)
chr2 (366-461)||(5256384-5256479)
chr2 (366-460)||(7670385-7670479)
[»] chr7 (12 HSPs)
chr7 (352-461)||(41482419-41482528)
chr7 (349-454)||(24429704-24429809)
chr7 (356-463)||(39594640-39594747)
chr7 (366-463)||(39644909-39645006)
chr7 (370-462)||(10026443-10026535)
chr7 (349-461)||(2333983-2334094)
chr7 (352-463)||(45884641-45884751)
chr7 (366-463)||(23318951-23319048)
chr7 (425-462)||(44107782-44107819)
chr7 (366-429)||(47038533-47038596)
chr7 (389-461)||(44335070-44335142)
chr7 (368-400)||(45980471-45980503)
[»] chr6 (6 HSPs)
chr6 (361-460)||(8573796-8573895)
chr6 (354-460)||(8547436-8547542)
chr6 (349-391)||(16342710-16342752)
chr6 (361-443)||(18596636-18596718)
chr6 (359-462)||(12771875-12771978)
chr6 (356-458)||(129102-129204)
[»] chr5 (4 HSPs)
chr5 (349-462)||(34731275-34731388)
chr5 (366-462)||(13109715-13109811)
chr5 (366-462)||(13039721-13039817)
chr5 (350-402)||(26447895-26447947)
[»] chr3 (11 HSPs)
chr3 (354-460)||(20524860-20524966)
chr3 (341-463)||(40416953-40417075)
chr3 (349-462)||(32490909-32491022)
chr3 (354-463)||(51976193-51976302)
chr3 (349-447)||(43545434-43545532)
chr3 (349-400)||(45850751-45850802)
chr3 (349-463)||(45818598-45818712)
chr3 (350-459)||(7038613-7038722)
chr3 (376-463)||(48936324-48936409)
chr3 (349-463)||(32794879-32794993)
chr3 (361-443)||(38457762-38457844)


Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 198 - 463
Target Start/End: Complemental strand, 31734585 - 31734321
Alignment:
Q  198 ctaagagataggggaggctggcggtggagtggaggaagatgaacagttgtagagaagaaaaaacaattgcaatcaattttgaaatagatcattggagagg 297  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31734585 ctaagagatagtg-aggctggcggtggagtggaggaagatgaacagttgcagagaagaaaaaacaattacaatcaattttgaaatagatcattggagagg 31734487  T
Q  298 gtgggagtcgaaagagggttttgaagnnnnnnngatgcgcatgtgataatattatgctatcaggttgttaacccaccaaaaactaaggataaaaataaca 397  Q
    ||||||||||||||||||||||||||       ||||||||||||| ||||||||| ||||| |||||||| ||||||||||||||||||||||||||||    
T  31734486 gtgggagtcgaaagagggttttgaagaataaaagatgcgcatgtgacaatattatgttatcatgttgttaatccaccaaaaactaaggataaaaataaca 31734387  T
Q  398 aagagtagataggataagattggaaataggtttaatttatcatttcctattggtgcaccaaacaac 463  Q
    ||| || ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31734386 aagggtggatgggataagattggaaataggtttaatttatcatttcttattggtgcaccaaacaac 31734321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 31734774 - 31734658
Alignment:
Q  13 aatatcaaattgggtttagatgaatcagtatttaaagattcacaaaaatggtgaaaattttgtgttgcaattgtaccagaaaatggaaagatcgtccaag 112  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||    
T  31734774 aatatcaaattgggtttagatgaatcagtatccaaagattcacaaaaatggtgaaaattttgttttgcaattgtaccaaaaaatggaaaaatcgtccaag 31734675  T
Q  113 aatatgaaattgggttc 129  Q
    |||||||||||||||||    
T  31734674 aatatgaaattgggttc 31734658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 349 - 463
Target Start/End: Complemental strand, 22573254 - 22573140
Alignment:
Q  349 ttatgctatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctatt 448  Q
    |||| |||||| ||||||||||||||||||||||||||||| ||| ||||||  |  |||||||| |||| |||| ||||| || |||||||||||| ||    
T  22573254 ttatcctatcatgttgttaacccaccaaaaactaaggataagaattacaaaggttcaataggataggattagaaacaggttaaacttatcatttcctgtt 22573155  T
Q  449 ggtgcaccaaacaac 463  Q
    |||||||||||||||    
T  22573154 ggtgcaccaaacaac 22573140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 354 - 461
Target Start/End: Complemental strand, 556895 - 556786
Alignment:
Q  354 ctatcaggttgttaacccaccaaaaa--ctaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggt 451  Q
    |||||| |||| ||||||||||||||  | |||||| | || ||||||| ||  |||||||| |||| ||||||||||||||||||||||| |||||| |    
T  556895 ctatcatgttgctaacccaccaaaaaaacaaaggattagaaaaacaaagggtgaataggatatgattagaaataggtttaatttatcattttctattgtt 556796  T
Q  452 gcaccaaaca 461  Q
    |||| |||||    
T  556795 gcacgaaaca 556786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 463
Target Start/End: Original strand, 9028635 - 9028744
Alignment:
Q  354 ctatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggtgc 453  Q
    ||||||||||| ||||||| ||||||| |||||||| ||| ||||||  |  |||||||| ||||  |||||||||||| ||||| |||  | |||||||    
T  9028635 ctatcaggttgctaacccatcaaaaaccaaggataagaattacaaaggttcaataggataggattaaaaataggtttaaattatccttttatgttggtgc 9028734  T
Q  454 accaaacaac 463  Q
    ||||||||||    
T  9028735 accaaacaac 9028744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 11066585 - 11066502
Alignment:
Q  366 taacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattg 449  Q
    ||||| |||||||| ||||||||||||||||||||  |   ||||||| |||| ||||||||||||| ||||| ||||||||||    
T  11066585 taacctaccaaaaattaaggataaaaataacaaaggctgagtaggataggattagaaataggtttaagttatcctttcctattg 11066502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 462
Target Start/End: Complemental strand, 39283824 - 39283713
Alignment:
Q  351 atgctatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattgg 450  Q
    |||||||||||||| |||||||||||||| ||| |||||||| || |||| ||  ||| |||| ||||| |||  ||||||||||||| |||  | ||||    
T  39283824 atgctatcaggttgctaacccaccaaaaattaaagataaaaaaaataaagggtgaatatgataggattgaaaaatggtttaatttatccttttatgttgg 39283725  T
Q  451 tgcaccaaacaa 462  Q
    |||| |||||||    
T  39283724 tgcatcaaacaa 39283713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 366 - 463
Target Start/End: Complemental strand, 32890053 - 32889956
Alignment:
Q  366 taacccaccaaaaactaaggataaaaataacaaa-gagtagataggataagattggaaataggtttaatttatcatttcctattggtgcaccaaacaac 463  Q
    ||||||||||||| ||||||||||||| |||||| ||| || | ||||| |||| |||||||||| || |||||||||| |||||| ||| ||||||||    
T  32890053 taacccaccaaaatctaaggataaaaacaacaaaggagaag-tgggataggattagaaataggttaaacttatcatttcatattggggcatcaaacaac 32889956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 366 - 463
Target Start/End: Complemental strand, 40028924 - 40028827
Alignment:
Q  366 taacccaccaaaaactaaggataaaaataacaaag-agtagataggataagattggaaataggtttaatttatcatttcctattggtgcaccaaacaac 463  Q
    |||||||| |||  ||||||||||||||||||||| || || |||||| ||||| |||| ||||| || |||||||||||| |||| ||||||||||||    
T  40028924 taacccacaaaatcctaaggataaaaataacaaaggaggag-taggatgagattagaaaaaggttaaagttatcatttcctgttggcgcaccaaacaac 40028827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 463
Target Start/End: Original strand, 38503855 - 38503951
Alignment:
Q  366 taacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggtgcaccaaacaac 463  Q
    ||||||||||||||||||  ||||||||||||||| ||   ||||||| | || ||| |  |||||| ||||  |||||| |||||||||||||||||    
T  38503855 taacccaccaaaaactaaaaataaaaataacaaagggtgagtaggatagggttagaagtgagtttaagttattctttcct-ttggtgcaccaaacaac 38503951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 6e-44; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 349 - 463
Target Start/End: Original strand, 45413766 - 45413880
Alignment:
Q  349 ttatgctatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctatt 448  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||| ||| |||||||||||||||||||| |||||||||    
T  45413766 ttatgctatcaggttgctaacccaccaaaaactaaggataaaaataacaaaggttagataggataggataggaaataggtttaatttatcctttcctatt 45413865  T
Q  449 ggtgcaccaaacaac 463  Q
    |||||||||||||||    
T  45413866 ggtgcaccaaacaac 45413880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 2183706 - 2183594
Alignment:
Q  13 aatatcaaattgggtttagatgaatcagtatttaaagattcacaaa-aatggtgaaaattttgtgttgcaattgtaccagaaaatggaaagatcgtccaa 111  Q
    |||||||||||||||||||||||||||||||| || |||||||||| || |||||||||||||| ||||||||||||||||||||| ||||||  |||||    
T  2183706 aatatcaaattgggtttagatgaatcagtattcaacgattcacaaataaaggtgaaaattttgttttgcaattgtaccagaaaatgcaaagataatccaa 2183607  T
Q  112 gaatatgaaattg 124  Q
    |||||||||||||    
T  2183606 gaatatgaaattg 2183594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 352 - 463
Target Start/End: Complemental strand, 2183411 - 2183300
Alignment:
Q  352 tgctatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggt 451  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||  | ||||||||| ||||||||||  |||||||||||| ||| ||||||||    
T  2183411 tgctatcaggttgctaacccaccaaaaattaaggataaaaataacaaaggttggataggataggattggaaatgagtttaatttatccttttctattggt 2183312  T
Q  452 gcaccaaacaac 463  Q
    ||||||||||||    
T  2183311 gcaccaaacaac 2183300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 45413422 - 45413539
Alignment:
Q  13 aatatcaaattgggtttagatgaatcagtatttaaagattcacaaa-aatggtgaaaattttgtgttgcaattgtaccagaaaatggaaagatcgtccaa 111  Q
    ||||||||||||| |||| |||||||||| || || |||||||||| || |||||||||||||| |||||||| |||||||||||| ||||||| |||||    
T  45413422 aatatcaaattggatttaaatgaatcagtgttcaacgattcacaaataaaggtgaaaattttgttttgcaattttaccagaaaatgcaaagatcatccaa 45413521  T
Q  112 gaatatgaaattgggttc 129  Q
    ||||||||||||| ||||    
T  45413522 gaatatgaaattgagttc 45413539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 350 - 463
Target Start/End: Original strand, 36625533 - 36625646
Alignment:
Q  350 tatgctatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattg 449  Q
    |||||||||| |||| ||||||| |||||| ||||||| | ||| |||||| ||  |||||||| |||| | ||||||||||||||||||| |||||||     
T  36625533 tatgctatcatgttgctaacccaacaaaaagtaaggattagaattacaaagggtgaataggataggattcgtaataggtttaatttatcatatcctatta 36625632  T
Q  450 gtgcaccaaacaac 463  Q
    ||||||||||||||    
T  36625633 gtgcaccaaacaac 36625646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 352 - 459
Target Start/End: Original strand, 26635260 - 26635367
Alignment:
Q  352 tgctatcaggttgttaacccaccaaaaactaaggataaaaataacaaa-gagtagataggataagattggaaataggtttaatttatcatttcctattgg 450  Q
    ||||||||||||| |||||||||||||||||||||||| ||||| ||| ||| || |||||||  |||||||||||||| |||||||||| || | ||||    
T  26635260 tgctatcaggttgctaacccaccaaaaactaaggataagaataataaaggaggag-taggatagaattggaaataggttaaatttatcatatcatgttgg 26635358  T
Q  451 tgcaccaaa 459  Q
    |||||||||    
T  26635359 tgcaccaaa 26635367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 349 - 447
Target Start/End: Complemental strand, 34666528 - 34666430
Alignment:
Q  349 ttatgctatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctat 447  Q
    |||||||||||||||| |||||||| ||||  || |||||||||||| ||||||   |||||||| |||| ||||||||||||| ||||||||||||||    
T  34666528 ttatgctatcaggttgctaacccacaaaaagttacggataaaaataagaaagagggaataggatatgattagaaataggtttaagttatcatttcctat 34666430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 361 - 462
Target Start/End: Original strand, 19181421 - 19181522
Alignment:
Q  361 gttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggtgcaccaaac 460  Q
    |||| ||| ||||||||||||||||| |||||||| ||||  |   ||||||| |||| ||||||||||||||||||||| || | ||||||||||||||    
T  19181421 gttgctaatccaccaaaaactaaggacaaaaataataaaggatgagtaggataggattagaaataggtttaatttatcatatcatgttggtgcaccaaac 19181520  T
Q  461 aa 462  Q
    ||    
T  19181521 aa 19181522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 367 - 459
Target Start/End: Original strand, 42964462 - 42964552
Alignment:
Q  367 aacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggtgcaccaaa 459  Q
    ||||||||||||||||||||| |||||||||  |||||||||||||| |||  | ||| ||||||| ||||| ||||||||||||||| ||||    
T  42964462 aacccaccaaaaactaaggattaaaataaca--gagtagataggataggataagtaatgggtttaaattatcctttcctattggtgcaacaaa 42964552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 459
Target Start/End: Complemental strand, 44126118 - 44126013
Alignment:
Q  354 ctatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggtgc 453  Q
    |||||| |||| ||||||| ||||||| ||| || | || ||||||  ||  |||||||| |||| |||||| ||||||||||||||||||||||| |||    
T  44126118 ctatcaagttgctaacccatcaaaaacaaagaattagaaaaacaaaaggtgaataggataggattagaaataagtttaatttatcatttcctattgctgc 44126019  T
Q  454 accaaa 459  Q
    ||||||    
T  44126018 accaaa 44126013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 463
Target Start/End: Original strand, 55945653 - 55945762
Alignment:
Q  354 ctatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggtgc 453  Q
    |||||| ||||||||||||||||||  ||| ||| ||||||| |||  |   |||||||| |||| ||||||| ||  ||||||| ||||||||||||||    
T  55945653 ctatcatgttgttaacccaccaaaagttaaagattaaaataagaaatggagaataggataggattagaaatagattggatttatcctttcctattggtgc 55945752  T
Q  454 accaaacaac 463  Q
    ||||||||||    
T  55945753 accaaacaac 55945762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 355 - 463
Target Start/End: Complemental strand, 33451436 - 33451328
Alignment:
Q  355 tatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggtgca 454  Q
    ||||| |||||||||||| |||||||||||||| | ||| ||||||  |  ||||||||  | | | |||||||||| |||||||| || ||||||||||    
T  33451436 tatcatgttgttaacccatcaaaaactaaggattataattacaaaggatgaataggatagaagtagtaataggtttattttatcatatcatattggtgca 33451337  T
Q  455 ccaaacaac 463  Q
    |||||||||    
T  33451336 ccaaacaac 33451328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 349 - 463
Target Start/End: Original strand, 43481302 - 43481414
Alignment:
Q  349 ttatgctatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctatt 448  Q
    |||||||||||||||| ||| ||| ||||||||| |||||||||||| |||  ||  ||| |||  |||| |||||  |||||||||||| |||| ||||    
T  43481302 ttatgctatcaggttgctaatccaacaaaaacta-ggataaaaataataaaaggtgaataagatg-gattagaaatgagtttaatttatcctttcttatt 43481399  T
Q  449 ggtgcaccaaacaac 463  Q
    |||||||||||||||    
T  43481400 ggtgcaccaaacaac 43481414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 35320739 - 35320693
Alignment:
Q  354 ctatcaggttgttaacccaccaaaaactaaggataaaaataacaaag 400  Q
    ||||||||||  ||| |||||||||||||||||| ||||||||||||    
T  35320739 ctatcaggtttgtaaaccaccaaaaactaaggattaaaataacaaag 35320693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 268 - 463
Target Start/End: Complemental strand, 6768466 - 6768267
Alignment:
Q  268 aatcaattttgaaataga-tcattggagagggtgggagtcgaaagagggt-tttgaagnnnnnnngatgcgcatgtg--ataatattatgctatcaggtt 363  Q
    |||| ||||||| ||||| | ||||||||||| ||||||||||||||||| |||||||       ||||||| ||||  ||  | |||||||||||||||    
T  6768466 aatcgattttgacatagaattattggagagggagggagtcgaaagagggtctttgaagaataaaagatgcgcgtgtgtgatgttgttatgctatcaggtt 6768367  T
Q  364 gttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggtgcaccaaacaac 463  Q
      |||||||||||||| ||||||||||||||||||||  | ||||| ||| ||| ||||||| |||||||||||||||| |||||||| |||||||||||    
T  6768366 cctaacccaccaaaaattaaggataaaaataacaaaggttggatagaataggataggaaataagtttaatttatcattttctattggtacaccaaacaac 6768267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 7 - 129
Target Start/End: Complemental strand, 6768677 - 6768554
Alignment:
Q  7 tcgaagaatatcaaattgggtttagatgaatcagtatttaaagattcacaaa-aatggtgaaaattttgtgttgcaattgtaccagaaaatggaaagatc 105  Q
    ||||| |||||||| |||||||||||||||||||| || || |||||||||| || |||||||||||||| |||||| | |||||||||||| |||||||    
T  6768677 tcgaataatatcaatttgggtttagatgaatcagtgttcaacgattcacaaataaaggtgaaaattttgttttgcaaatttaccagaaaatgcaaagatc 6768578  T
Q  106 gtccaagaatatgaaattgggttc 129  Q
    ||||||||||||||||||| ||||    
T  6768577 gtccaagaatatgaaattgagttc 6768554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 349 - 462
Target Start/End: Original strand, 9383223 - 9383336
Alignment:
Q  349 ttatgctatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctatt 448  Q
    |||||||||||||||| ||||||| |||||| ||||||| |||||||||||| ||   |||||||||||| ||||| |||||||||||||  ||||||||    
T  9383223 ttatgctatcaggttgctaacccatcaaaaattaaggatgaaaataacaaagggtgagtaggataagattagaaattggtttaatttatccgttcctatt 9383322  T
Q  449 ggtgcaccaaacaa 462  Q
    ||||||||||||||    
T  9383323 ggtgcaccaaacaa 9383336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 355 - 454
Target Start/End: Original strand, 19806758 - 19806857
Alignment:
Q  355 tatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggtgca 454  Q
    ||||||||||||||||||||||||||||||||| | || ||||||||||  |||||||| |||| ||||||||||||||||||| |||||||||| ||||    
T  19806758 tatcaggttgttaacccaccaaaaactaaggattagaaaaacaaagagtgaataggataggattagaaataggtttaatttatcctttcctattgatgca 19806857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 349 - 463
Target Start/End: Complemental strand, 26793876 - 26793762
Alignment:
Q  349 ttatgctatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtaga-taggataagattggaaataggtttaatttatcatttcctat 447  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||| || || ||||||| |||| |||||| |||||| ||||| ||| ||||    
T  26793876 ttatgctatcaggttgctaacccaccaaaaactaagaataaaaataacaaag-gttgattaggataggattagaaataagtttaagttatccttttctat 26793778  T
Q  448 tggtgcaccaaacaac 463  Q
    ||||||||||||||||    
T  26793777 tggtgcaccaaacaac 26793762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 347 - 461
Target Start/End: Original strand, 4076340 - 4076454
Alignment:
Q  347 tattatgctatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttccta 446  Q
    |||||| ||||||||||  ||| |||||||||||||||||| | || ||||||||||  |||||||| |||| | ||||||||||||||||| |||||||    
T  4076340 tattatcctatcaggttcctaatccaccaaaaactaaggattagaaaaacaaagagtgaataggataggattagtaataggtttaatttatcctttccta 4076439  T
Q  447 ttggtgcaccaaaca 461  Q
    ||| |||||||||||    
T  4076440 ttgatgcaccaaaca 4076454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 366 - 461
Target Start/End: Original strand, 50004909 - 50005004
Alignment:
Q  366 taacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggtgcaccaaaca 461  Q
    ||||||||||||||||||||||||||||||||||| ||   ||||||| |||| ||||||||||||| ||||| |||  |||||||||||||||||    
T  50004909 taacccaccaaaaactaaggataaaaataacaaagggtgattaggataggattagaaataggtttaaattatccttttttattggtgcaccaaaca 50005004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 366 - 461
Target Start/End: Complemental strand, 4950292 - 4950198
Alignment:
Q  366 taacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggtgcaccaaaca 461  Q
    ||||||||||||||||| ||||||||||||||||| ||| |||||||| ||||| ||||  |||||| ||||||||| |||||| |||||||||||    
T  4950292 taacccaccaaaaacta-ggataaaaataacaaagggtaaataggatatgattgaaaatgagtttaaattatcattttctattgatgcaccaaaca 4950198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 349 - 437
Target Start/End: Original strand, 42471969 - 42472057
Alignment:
Q  349 ttatgctatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttat 437  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||||    ||||||||||||  | |||||||||| |||||    
T  42471969 ttatgctatcaggttgttaacccaccaaaaactaaggattaaaattacaaagaagcaataggataagataagtaataggtttattttat 42472057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 355 - 462
Target Start/End: Complemental strand, 49236280 - 49236173
Alignment:
Q  355 tatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggtgca 454  Q
    |||||||||| ||||||||||||||| |||||||  ||||| ||||  | | ||||||| ||   |||||| |||||||||||| ||| |||||||||||    
T  49236280 tatcaggttgctaacccaccaaaaaccaaggatatgaataagaaaggttgggtaggataggaaatgaaatatgtttaatttatccttttctattggtgca 49236181  T
Q  455 ccaaacaa 462  Q
    ||||||||    
T  49236180 ccaaacaa 49236173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 454
Target Start/End: Complemental strand, 7904256 - 7904161
Alignment:
Q  359 aggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggtgca 454  Q
    |||||| || |||||| |||||||||| || ||||||||||||||  |||||| |  ||||  ||||||||||||||||||| |||||||| ||||    
T  7904256 aggttgctagcccaccgaaaactaagggtagaaataacaaagagtgaataggagataattgataataggtttaatttatcatatcctattgatgca 7904161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 454
Target Start/End: Original strand, 8002685 - 8002780
Alignment:
Q  359 aggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggtgca 454  Q
    |||||| || |||||| |||||||||| || ||||||||||||||  |||||| |  ||||  ||||||||||||||||||| |||||||| ||||    
T  8002685 aggttgctagcccaccgaaaactaagggtagaaataacaaagagtgaataggagataattgataataggtttaatttatcatatcctattgatgca 8002780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 459
Target Start/End: Original strand, 45792691 - 45792784
Alignment:
Q  366 taacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggtgcaccaaa 459  Q
    |||||||||||||||||||||||| ||| ||||||  |  |||||||| |||| |||| | ||| || ||||||||| || |||||||||||||    
T  45792691 taacccaccaaaaactaaggataagaattacaaaggctcaataggataggattagaaacatgttaaacttatcattttctgttggtgcaccaaa 45792784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 49288097 - 49288051
Alignment:
Q  354 ctatcaggttgttaacccaccaaaaactaaggataaaaataacaaag 400  Q
    ||||||||||| ||||||| | |||||||||||| ||||||||||||    
T  49288097 ctatcaggttgctaacccaactaaaactaaggattaaaataacaaag 49288051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 399
Target Start/End: Complemental strand, 7902089 - 7902048
Alignment:
Q  358 caggttgttaacccaccaaaaactaaggataaaaataacaaa 399  Q
    ||||||| |||||||||||||||||||| || ||||||||||    
T  7902089 caggttgctaacccaccaaaaactaagggtagaaataacaaa 7902048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 399
Target Start/End: Complemental strand, 7905539 - 7905498
Alignment:
Q  358 caggttgttaacccaccaaaaactaaggataaaaataacaaa 399  Q
    ||||||| |||||||||||||||||||| || ||||||||||    
T  7905539 caggttgctaacccaccaaaaactaagggtagaaataacaaa 7905498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 463
Target Start/End: Original strand, 42472062 - 42472103
Alignment:
Q  422 aataggtttaatttatcatttcctattggtgcaccaaacaac 463  Q
    |||||||||| |||||||||||||| || |||||||||||||    
T  42472062 aataggtttattttatcatttcctactgatgcaccaaacaac 42472103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 415 - 459
Target Start/End: Complemental strand, 49288050 - 49288006
Alignment:
Q  415 gattggaaataggtttaatttatcatttcctattggtgcaccaaa 459  Q
    |||||| |||||||||| ||||||||||  |||||||||||||||    
T  49288050 gattggcaataggtttattttatcattttgtattggtgcaccaaa 49288006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 349 - 463
Target Start/End: Complemental strand, 6457717 - 6457603
Alignment:
Q  349 ttatgctatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctatt 448  Q
    ||||||||| ||||  ||||||||||||||| |||||||||||||||||||| || |||| |||| |||||||||| | ||||||||||||||| |||||    
T  6457717 ttatgctattaggtaattaacccaccaaaaattaaggataaaaataacaaagggtggataagatatgattggaaattgatttaatttatcattttctatt 6457618  T
Q  449 ggtgcaccaaacaac 463  Q
    |||||||||||||||    
T  6457617 ggtgcaccaaacaac 6457603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 349 - 461
Target Start/End: Complemental strand, 40626588 - 40626476
Alignment:
Q  349 ttatgctatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctatt 448  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||| |||| ||   ||||||| |||| ||||||  ||||| ||||| |||||||||    
T  40626588 ttatgctatcaggttgttaacccaccaaaatttaaggataaaaataataaagggtgagtaggataggattagaaatatatttaaattatcctttcctatt 40626489  T
Q  449 ggtgcaccaaaca 461  Q
    |||||||||||||    
T  40626488 ggtgcaccaaaca 40626476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 6457996 - 6457878
Alignment:
Q  13 aatatcaaattgggtttagatgaatcagtatttaaagattcacaaa-aatggtgaaaattttgtgtt-gcaattgtaccagaaaatggaaagatcgtcca 110  Q
    ||||||||||||||||||||  |||||||||| || |||||||||| || |||||||||||||| || |||||||||| |||||||| ||||||  ||||    
T  6457996 aatatcaaattgggtttagacaaatcagtattcaacgattcacaaataaaggtgaaaattttgtttttgcaattgtacgagaaaatgcaaagattatcca 6457897  T
Q  111 agaatatgaaattgggttc 129  Q
    |||||||||||||| ||||    
T  6457896 agaatatgaaattgagttc 6457878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 349 - 462
Target Start/End: Original strand, 40054459 - 40054572
Alignment:
Q  349 ttatgctatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctatt 448  Q
    |||| |||| |||||| ||||||| | |||||||||||| ||||||||||||  | ||||||||| ||||   |||||||||| |||||||||| |||||    
T  40054459 ttatcctattaggttgctaacccagctaaaactaaggattaaaataacaaaggattgataggataggattaacaataggtttagtttatcattttctatt 40054558  T
Q  449 ggtgcaccaaacaa 462  Q
    ||||||||||||||    
T  40054559 ggtgcaccaaacaa 40054572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 350 - 460
Target Start/End: Complemental strand, 6452581 - 6452471
Alignment:
Q  350 tatgctatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattg 449  Q
    |||||||| |||||  ||||||| |||||||||||||| | ||| |||||| ||  ||||||||||||| | ||||||||||||||||||| || |||||    
T  6452581 tatgctataaggtttctaacccaacaaaaactaaggattagaattacaaagcgtgaataggataagattagtaataggtttaatttatcatatcttattg 6452482  T
Q  450 gtgcaccaaac 460  Q
    ||||| |||||    
T  6452481 gtgcatcaaac 6452471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 463
Target Start/End: Complemental strand, 18665262 - 18665165
Alignment:
Q  366 taacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggtgcaccaaacaac 463  Q
    |||||||||||||| ||||||||||| |||||||| ||   || ||||  ||| ||||||||||||| ||||| |||||| ||||||||| |||||||    
T  18665262 taacccaccaaaaattaaggataaaattaacaaagggtgagtaagatattattagaaataggtttaagttatcctttccttttggtgcacgaaacaac 18665165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 461
Target Start/End: Complemental strand, 5256479 - 5256384
Alignment:
Q  366 taacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggtgcaccaaaca 461  Q
    ||||||| | ||||| |||||||||||||||||||||   |||||||| ||||   || | ||||||||||||||||||||  |||||||||||||    
T  5256479 taacccagctaaaacaaaggataaaaataacaaagagccaataggataggattaacaacaagtttaatttatcatttcctaccggtgcaccaaaca 5256384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 366 - 460
Target Start/End: Complemental strand, 7670479 - 7670385
Alignment:
Q  366 taacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggtgcaccaaac 460  Q
    |||||||||||||| ||||||||| ||| |||||   |  |||||||| |||| |||| ||||| || ||||||||| |||||||||||||||||    
T  7670479 taacccaccaaaaattaaggataagaattacaaaagctcaataggataggattagaaacaggttaaacttatcattttctattggtgcaccaaac 7670385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 352 - 461
Target Start/End: Original strand, 41482419 - 41482528
Alignment:
Q  352 tgctatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggt 451  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||   ||||||| ||||  |||||||||||| ||||| |||||| |||||    
T  41482419 tgctatcaggttgctaacccaccaaaaactaaggataaaaataacaaagggtgagtaggatatgattaaaaataggtttaagttatcctttcctgttggt 41482518  T
Q  452 gcaccaaaca 461  Q
    ||||||||||    
T  41482519 gcaccaaaca 41482528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 349 - 454
Target Start/End: Complemental strand, 24429809 - 24429704
Alignment:
Q  349 ttatgctatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctatt 448  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||   || |||| ||||  |||||| ||||| ||||||||| |||||    
T  24429809 ttatgctatcaggttgctaacccaccaaaaactaaggataaaaataacaaagggtgagtaagataggattataaatagttttaaattatcattttctatt 24429710  T
Q  449 ggtgca 454  Q
    ||||||    
T  24429709 ggtgca 24429704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 356 - 463
Target Start/End: Complemental strand, 39594747 - 39594640
Alignment:
Q  356 atcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggtgcac 455  Q
    |||| |||| ||||||| |||||||||||||||||||| ||||||  |  ||| ||||||||| | ||||||||||||||| ||| || |||||||||||    
T  39594747 atcatgttgctaacccatcaaaaactaaggataaaaattacaaaggatgaatatgataagattagtaataggtttaatttagcatatcttattggtgcac 39594648  T
Q  456 caaacaac 463  Q
    ||||||||    
T  39594647 caaacaac 39594640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 366 - 463
Target Start/End: Complemental strand, 39645006 - 39644909
Alignment:
Q  366 taacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggtgcaccaaacaac 463  Q
    |||||||||||||||||||||||||||||||||||  |   ||||||| ||||  |||| ||||||| ||||| ||| ||||||| ||||||||||||    
T  39645006 taacccaccaaaaactaaggataaaaataacaaaggatgagtaggataggattataaatgggtttaagttatccttttctattggcgcaccaaacaac 39644909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 462
Target Start/End: Complemental strand, 10026535 - 10026443
Alignment:
Q  370 ccaccaaaaactaaggataaaaataacaaag-agtagataggataagattggaaataggtttaatttatcatttcctattggtgcaccaaacaa 462  Q
    |||||||||||||||||||| |||||||||| || || | ||||| |||| |||||||||| || |||||||||| | ||||||||||||||||    
T  10026535 ccaccaaaaactaaggataagaataacaaaggaggag-tgggatatgattagaaataggttaaacttatcatttcatgttggtgcaccaaacaa 10026443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 461
Target Start/End: Original strand, 2333983 - 2334094
Alignment:
Q  349 ttatgctatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctatt 448  Q
    |||||||||| ||||| ||||| ||||||||| |  |||||||||||||||  ||  |||||||| ||||  |||||||||||| |||||   |||||||    
T  2333983 ttatgctatc-ggttgctaaccaaccaaaaaccagagataaaaataacaaaaggtgaataggataggattaaaaataggtttaagttatccaatcctatt 2334081  T
Q  449 ggtgcaccaaaca 461  Q
    |||||||||||||    
T  2334082 ggtgcaccaaaca 2334094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 463
Target Start/End: Original strand, 45884641 - 45884751
Alignment:
Q  352 tgctatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggt 451  Q
    |||| |||| |||||||||| ||||||||| |||||||||||||||||||| || ||||||| ||||  |||| | ||||| |||||  ||| || ||||    
T  45884641 tgctttcagattgttaacccgccaaaaacttaggataaaaataacaaagaggag-taggatatgattaaaaatggttttaaattatccattcatactggt 45884739  T
Q  452 gcaccaaacaac 463  Q
    |||| |||||||    
T  45884740 gcactaaacaac 45884751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 463
Target Start/End: Original strand, 23318951 - 23319048
Alignment:
Q  366 taacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggtgcaccaaacaac 463  Q
    ||||||| ||||||| |||||||||||| ||||||  |  |||||||| ||||  |||||||||||| ||||| |||| | |||||| ||||||||||    
T  23318951 taacccatcaaaaaccaaggataaaaattacaaaggctcaataggataggattaaaaataggtttaaattatcctttcatgttggtggaccaaacaac 23319048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 425 - 462
Target Start/End: Complemental strand, 44107819 - 44107782
Alignment:
Q  425 aggtttaatttatcatttcctattggtgcaccaaacaa 462  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44107819 aggtttaatttatcatttcctattggtgcaccaaacaa 44107782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 429
Target Start/End: Complemental strand, 47038596 - 47038533
Alignment:
Q  366 taacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtt 429  Q
    |||||||||||||||||| ||||||| |||||||| || | || |||| |||| ||||||||||    
T  47038596 taacccaccaaaaactaaagataaaagtaacaaagggtgggtacgatatgattagaaataggtt 47038533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 461
Target Start/End: Complemental strand, 44335142 - 44335070
Alignment:
Q  389 aaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggtgcaccaaaca 461  Q
    ||||||||||||||||||||||||| |||    |||  |||||| ||||| ||| ||||||||||| ||||||    
T  44335142 aaaataacaaagagtagataggataggataaataatgagtttaaattatccttttctattggtgcaacaaaca 44335070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 400
Target Start/End: Original strand, 45980471 - 45980503
Alignment:
Q  368 acccaccaaaaactaaggataaaaataacaaag 400  Q
    |||||||||||| ||||||||||||||||||||    
T  45980471 acccaccaaaaagtaaggataaaaataacaaag 45980503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 361 - 460
Target Start/End: Original strand, 8573796 - 8573895
Alignment:
Q  361 gttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggtgcaccaaac 460  Q
    |||| ||||||||||||||||||| ||||||||||||||| ||  ||| ||||||||| ||||||||||||| |||||||||||||||| ||| ||||||    
T  8573796 gttgctaacccaccaaaaactaagtataaaaataacaaagggtgaatatgataagattagaaataggtttaagttatcatttcctattgatgctccaaac 8573895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 354 - 460
Target Start/End: Original strand, 8547436 - 8547542
Alignment:
Q  354 ctatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggtgc 453  Q
    |||||| |||| ||||||||||||||||||| ||||||||||||||| ||  ||| ||||||||| ||||||||||||| ||||| |||||||||| |||    
T  8547436 ctatcatgttgctaacccaccaaaaactaagtataaaaataacaaagggtgaatatgataagattagaaataggtttaagttatcctttcctattgatgc 8547535  T
Q  454 accaaac 460  Q
     ||||||    
T  8547536 tccaaac 8547542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 391
Target Start/End: Original strand, 16342710 - 16342752
Alignment:
Q  349 ttatgctatcaggttgttaacccaccaaaaactaaggataaaa 391  Q
    |||||||||||||||| |||||||||||||| |||||||||||    
T  16342710 ttatgctatcaggttgctaacccaccaaaaattaaggataaaa 16342752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 443
Target Start/End: Original strand, 18596636 - 18596718
Alignment:
Q  361 gttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttc 443  Q
    |||| |||||||||||||||||||||||||| ||| |||| || | || || | ||||  |||||||||||| ||||||||||    
T  18596636 gttgctaacccaccaaaaactaaggataaaagtaataaagggttggtatgaaaggattaaaaataggtttaaattatcatttc 18596718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 462
Target Start/End: Original strand, 12771875 - 12771978
Alignment:
Q  359 aggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggtgcaccaa 458  Q
    |||||| ||||||| |  ||||||||||| |||| ||||||||||  ||||||||||||    || |||||| |||| |||| || ||||| ||||||||    
T  12771875 aggttgctaacccagcctaaactaaggattaaaaaaacaaagagtttataggataagataaataaaaggtttgatttctcatatcatattgctgcaccaa 12771974  T
Q  459 acaa 462  Q
    ||||    
T  12771975 acaa 12771978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 458
Target Start/End: Original strand, 129102 - 129204
Alignment:
Q  356 atcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggtgcac 455  Q
    |||| |||| || |||| |||||||||| |||||||||||||||| ||  ||| |||| ||||  ||||  |||||| ||||  |||||||||| |||||    
T  129102 atcatgttgctagcccatcaaaaactaaagataaaaataacaaagggtgaatatgataggattaaaaatgagtttaagttattttttcctattgatgcac 129201  T
Q  456 caa 458  Q
    |||    
T  129202 caa 129204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 349 - 462
Target Start/End: Complemental strand, 34731388 - 34731275
Alignment:
Q  349 ttatgctatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctatt 448  Q
    |||| ||||||||||| ||||||| | |||||||||||| ||||||||||||  | ||||||||| ||||   |||||||||| |||||| |||||||||    
T  34731388 ttatcctatcaggttgctaacccagctaaaactaaggattaaaataacaaaggattgataggataggattaacaataggtttagtttatcctttcctatt 34731289  T
Q  449 ggtgcaccaaacaa 462  Q
    ||||||||||||||    
T  34731288 ggtgcaccaaacaa 34731275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 366 - 462
Target Start/End: Complemental strand, 13109811 - 13109715
Alignment:
Q  366 taacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggtgcaccaaacaa 462  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||| |||| |||||| ||| || ||||||||| |||| || |||||||||||    
T  13109811 taacccaccaaaaactaaggataaaaataacaaagggtggataggatatgattagaaatatgttaaacttatcattttctatgggcgcaccaaacaa 13109715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 366 - 462
Target Start/End: Complemental strand, 13039817 - 13039721
Alignment:
Q  366 taacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggtgcaccaaacaa 462  Q
    |||||||||||||||||||||||||||||| ||||  | |||||||||  ||| |||||| ||| || |||||||||||||| || |||||||||||    
T  13039817 taacccaccaaaaactaaggataaaaataataaaggatggataggatataattagaaatatgttaaacttatcatttcctatgggcgcaccaaacaa 13039721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 402
Target Start/End: Complemental strand, 26447947 - 26447895
Alignment:
Q  350 tatgctatcaggttgttaacccaccaaaaactaaggataaaaataacaaagag 402  Q
    |||||||||| |||| |||||||  |||||||||||||||||||| |||||||    
T  26447947 tatgctatcatgttgctaacccattaaaaactaaggataaaaatatcaaagag 26447895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 354 - 460
Target Start/End: Complemental strand, 20524966 - 20524860
Alignment:
Q  354 ctatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggtgc 453  Q
    |||||| |||||||||||||||||||  |||||| ||||| ||||||  ||||||||||| ||||   ||| ||||||||||||| | || |||||||||    
T  20524966 ctatcaagttgttaacccaccaaaaatcaaggattaaaattacaaaggatagataggatatgattactaatgggtttaatttatcgtatcatattggtgc 20524867  T
Q  454 accaaac 460  Q
    |||||||    
T  20524866 accaaac 20524860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 341 - 463
Target Start/End: Complemental strand, 40417075 - 40416953
Alignment:
Q  341 tgataatattatgctatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcat 440  Q
    ||||||| || ||||||||||||| ||||| | ||||||| |||||||| ||||| |||| || | ||||||| ||||  |||||  |||||||||||||    
T  40417075 tgataattttgtgctatcaggttgctaaccaaacaaaaaccaaggataagaataataaagggttggtaggataggattaaaaatatatttaatttatcat 40416976  T
Q  441 ttcctattggtgcaccaaacaac 463  Q
    || || ||| |||||||||||||    
T  40416975 tttctgttgatgcaccaaacaac 40416953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 349 - 462
Target Start/End: Complemental strand, 32491022 - 32490909
Alignment:
Q  349 ttatgctatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctatt 448  Q
    |||| ||||||||||| ||||||| | |||||||||||| ||||||||||||  | |||||||||  ||| | |||||||||   ||||| |||| ||||    
T  32491022 ttatcctatcaggttgctaacccagctaaaactaaggattaaaataacaaaggattgataggatagaattagcaataggtttcgattatcctttcatatt 32490923  T
Q  449 ggtgcaccaaacaa 462  Q
    ||||||||||||||    
T  32490922 ggtgcaccaaacaa 32490909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 354 - 463
Target Start/End: Complemental strand, 51976302 - 51976193
Alignment:
Q  354 ctatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattggtgc 453  Q
    |||||||||||||||||||||||||   |||||| | || ||||||  ||  ||||||||||||| |||||||  |||  ||||||||| ||||||||||    
T  51976302 ctatcaggttgttaacccaccaaaattcaaggattagaaaaacaaatggtgaataggataagattagaaatagccttagcttatcattttctattggtgc 51976203  T
Q  454 accaaacaac 463  Q
    ||||||||||    
T  51976202 accaaacaac 51976193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 349 - 447
Target Start/End: Complemental strand, 43545532 - 43545434
Alignment:
Q  349 ttatgctatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctat 447  Q
    |||||| ||| | ||| |||||||||||||||||| || |||||||||||||| | ||||| |||||| | || | |||||||| ||||||||||||||    
T  43545532 ttatgccatcggattgctaacccaccaaaaactaatgagaaaaataacaaagaatggatagaataagactagagacaggtttaagttatcatttcctat 43545434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 400
Target Start/End: Original strand, 45850751 - 45850802
Alignment:
Q  349 ttatgctatcaggttgttaacccaccaaaaactaaggataaaaataacaaag 400  Q
    |||||||||||||||| ||||||||||||||  |||||||| ||||||||||    
T  45850751 ttatgctatcaggttgctaacccaccaaaaatcaaggataagaataacaaag 45850802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 463
Target Start/End: Original strand, 45818598 - 45818712
Alignment:
Q  349 ttatgctatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctatt 448  Q
    ||||||||||| ||||  ||| |||||||||||||||||||||| |||||||| |  ||  |||| |||    |||||||||| |||||| ||| ||| |    
T  45818598 ttatgctatcaagttgccaactcaccaaaaactaaggataaaaacaacaaagaatgaatgagataggataaacaataggtttattttatcttttgctact 45818697  T
Q  449 ggtgcaccaaacaac 463  Q
    | |||||||||||||    
T  45818698 gatgcaccaaacaac 45818712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 350 - 459
Target Start/End: Complemental strand, 7038722 - 7038613
Alignment:
Q  350 tatgctatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctattg 449  Q
    |||||||||| |||| ||||||| |||||| ||||||| | ||| |||||   |  ||| |||| |||| | ||||||||||||||||||| |||||||     
T  7038722 tatgctatcatgttgctaacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattagtaataggtttaatttatcatatcctatta 7038623  T
Q  450 gtgcaccaaa 459  Q
    ||| ||||||    
T  7038622 gtgtaccaaa 7038613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 376 - 463
Target Start/End: Original strand, 48936324 - 48936409
Alignment:
Q  376 aaaactaaggataaaaataacaaa-gagtagataggataagattggaaataggtttaatttatcatttcctattggtgcaccaaacaac 463  Q
    |||||||||||||||||||||||| ||| || ||||||| ||||  ||| |||||||| |||||  ||||| |||||||||||||||||    
T  48936324 aaaactaaggataaaaataacaaaggagaag-taggataggattaaaaacaggtttaaattatc--ttcctgttggtgcaccaaacaac 48936409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 463
Target Start/End: Original strand, 32794879 - 32794993
Alignment:
Q  349 ttatgctatcaggttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttcctatt 448  Q
    ||||| |||||  ||||||| ||||||||||||||  |||||||||||||||| |   |||||  | ||| ||||||  ||||| |||||||||  ||||    
T  32794879 ttatgttatcaaattgttaatccaccaaaaactaactataaaaataacaaagaatgagtaggaacaaattagaaataaatttaaattatcattttttatt 32794978  T
Q  449 ggtgcaccaaacaac 463  Q
     ||||||||| ||||    
T  32794979 agtgcaccaaccaac 32794993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 443
Target Start/End: Complemental strand, 38457844 - 38457762
Alignment:
Q  361 gttgttaacccaccaaaaactaaggataaaaataacaaagagtagataggataagattggaaataggtttaatttatcatttc 443  Q
    |||| |||||||||||| ||||||||||||| |||||||  ||  |||||||| |||| |||||  |||||| ||||| ||||    
T  38457844 gttgctaacccaccaaatactaaggataaaagtaacaaaaggtgaataggataggattagaaatgagtttaaattatcctttc 38457762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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