View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2805_low_8 (Length: 431)
Name: NF2805_low_8
Description: NF2805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2805_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 20701126 - 20701499
Alignment:
| Q |
1 |
ttcacagttgagtttaccacctggtttcagattcttccccactgatgaggagcttcttgttcagtatctatgtcgtaaagttgcaggacatcatttttct |
100 |
Q |
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| T |
20701126 |
ttcacagttgagtttaccacctggtttcagattcttccccactgatgaggagcttcttgttcaatatctatgtcgtaaagttgcaggacatcatttttct |
20701225 |
T |
|
| Q |
101 |
ttgccaattattgctgaaattgatttgtataaatttgatccttgggttcttccaggtaattatctatcaccaatgtttatttcaagttttaggttgcaat |
200 |
Q |
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| T |
20701226 |
ttgccaattattgctgaaattgatttgtataaatttgatccttgggttcttccaggtaattatctatcaccaatgtttatttcaagttttaggttgcaat |
20701325 |
T |
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| Q |
201 |
tgtagaatttttcatgtctttcaattttaaatatatgtcagaatcacagtgaaccagaatgattttgcaatagttacactttctagctcgtaacttttgc |
300 |
Q |
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| T |
20701326 |
tgtagaatttttcatgtctttcaattttaaatatatgttagaatcacggtgaaccagtatgattttgcaatagttacactttctagctagtaacttttgc |
20701425 |
T |
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| Q |
301 |
aagatcgcaccgtattcgaacacttttgcaatatttaaggatcataagcttaacttagttggtatggacaatac |
374 |
Q |
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| T |
20701426 |
aagatcgcaccctattctaacacttttgcaatagttaagaatcatatgcttaactcagttggtatggacaatac |
20701499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 3 - 159
Target Start/End: Original strand, 33727567 - 33727723
Alignment:
| Q |
3 |
cacagttgagtttaccacctggtttcagattcttccccactgatgaggagcttcttgttcagtatctatgtcgtaaagttgcaggacatcatttttcttt |
102 |
Q |
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|||| ||||||||||| |||||||| ||||| | |||||||||||| |||||||||||||| ||||||||||| ||||| || || |||||||||||| | |
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| T |
33727567 |
cacaattgagtttacctcctggttttagattttaccccactgatgaagagcttcttgttcaatatctatgtcgcaaagtagctggtcatcatttttctct |
33727666 |
T |
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| Q |
103 |
gccaattattgctgaaattgatttgtataaatttgatccttgggttcttccaggtaa |
159 |
Q |
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| ||| ||||||||||||||| | || ||||| || || ||| |||||||| |||| |
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| T |
33727667 |
tcaaatcattgctgaaattgatctctacaaattcgacccatggattcttccaagtaa |
33727723 |
T |
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