View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2806_high_1 (Length: 461)
Name: NF2806_high_1
Description: NF2806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2806_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 11 - 441
Target Start/End: Original strand, 7405360 - 7405790
Alignment:
| Q |
11 |
cacagaggacaatgcatctgcaacgtttttcaacattgcgggtgcagatggaacaattgtggcagattacttgccggaggggtttttgaataggacaaaa |
110 |
Q |
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| T |
7405360 |
cacagaggacaatgcatccgcaacgtttttcaacattgcgggtgcagatggaacaattatggtagattacttgccgaaggggtttttgaataggacaaaa |
7405459 |
T |
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| Q |
111 |
gacgtagggctttgtgttcccatgtgggcccctcaagctgaaatattgaaacatccttcaacgggtggttttttgacacattgcggttggaattctgtgt |
210 |
Q |
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| T |
7405460 |
gacgtagggctttgtgttcccatgtgggcccctcaagctgagatattgaaacatccttcaacgggtggttttttgacacattgtggttggaattctgtgt |
7405559 |
T |
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| Q |
211 |
tggagagtattcataacggtgttccaatggttgcatggccgctttatgcagagcagaagatgaatgcaactatgttatcagaggagcttggtgtggcggt |
310 |
Q |
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| T |
7405560 |
tggagagtattcataacggtgttccaatggttgcatggccgctttatgctgagcagaagatgaatgcaactatgttatcagaggagcttggtgtggcggt |
7405659 |
T |
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| Q |
311 |
gaaagcgacaacagcggtggcagagggtggtgttgtttgtagggaaaagatagcggaggtgattagaaaagtgatggtggatgaagaaggtgtagctatg |
410 |
Q |
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| T |
7405660 |
gaaagcgacaaaaacggtggcagagggtggtgttgtttgtagggaaaagatagcggaggtgattagaaaagtgatggtggatgatgaaggtgtagctatg |
7405759 |
T |
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| Q |
411 |
agagttaaagttaaggagtataaggtaagtg |
441 |
Q |
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| T |
7405760 |
agagttaaagttaaggagtataaggtaagtg |
7405790 |
T |
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