View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2806_high_3 (Length: 413)
Name: NF2806_high_3
Description: NF2806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2806_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 13 - 396
Target Start/End: Original strand, 46863830 - 46864213
Alignment:
| Q |
13 |
gagaaattgggaggaagatcaaaaattcattcacaagatgaagctatgcaggatgtattccaatggtgagaaatgtttctttggtagtaagtgtaatttt |
112 |
Q |
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| T |
46863830 |
gagaaattgggaggaagatcaaaaattcattcacaagatgaagctatgcaggatgtattccaatggtgagaaatgtttctttggtagtaagtgtaatttt |
46863929 |
T |
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| Q |
113 |
cgtcatgaggatcctgctaagtctagggatcattcttggaagtcaggagtgtgttcttctataagcattgggactattggttcttcaaaatcatttgggg |
212 |
Q |
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| T |
46863930 |
cgtcatgaggatcctgctaagtctagggatcattcttggaagtcaggagagtgttcttctataagcattgggactattggttcttcaaaatcatttgggg |
46864029 |
T |
|
| Q |
213 |
atgacattagggctgtgaacaagccagctaggggcacttattggaagaataatatgtgtttccgttggcagcatcaagggagctgtccctttggggagga |
312 |
Q |
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| T |
46864030 |
atggcattagggctgtgaacaagccagctaggggcacttattggaagaataatatgtgtttccgttggcagcatcaagggagctgtccctttggggagga |
46864129 |
T |
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| Q |
313 |
ctgtcacttttctcatggagaagcaggtgataataactcatctttgtgttgatttccctattcccatttttgattattggtctt |
396 |
Q |
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| T |
46864130 |
ctgtcacttttctcatggagaagcaggtaataataactcatctttgtgttgatttcccttttcccttttttgattattggtctt |
46864213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 16 - 369
Target Start/End: Original strand, 46898949 - 46899317
Alignment:
| Q |
16 |
aaattgggaggaagatcaaaaattcattcacaagatgaagctatgcaggatgtattccaatggtgagaaatgtttctttggtagtaagtgtaattttcgt |
115 |
Q |
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| T |
46898949 |
aaattgggatgaagatcaaaaaatcattcacaagatgaagctgtgtaagaagtattacattggtgaggaatgtccttatggtgataagtgtagctttctt |
46899048 |
T |
|
| Q |
116 |
catgaggatcctgctaagtctagggatcattcttggaagtcaggagtgtgttcttctataagcattgggactattggttcttcaaaatcatttgg----- |
210 |
Q |
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|||||||||||||||| || ||||||| ||||||||| || ||| ||||||| | |||||| |||| | |||||||||| |||| || ||||| |
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| T |
46899049 |
catgaggatcctgctaggtttagggatgcttcttggaaaacaagagagtgttctgcaataagcgttggaaatattggttctccaaagtcttttgggtatg |
46899148 |
T |
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| Q |
211 |
-------------ggatgacattagggctgtgaacaagccagctaggggcacttattggaagaataatatgtgtttccgttggcagcatcaagggagctg |
297 |
Q |
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| T |
46899149 |
gttctaacaatttggaaggcattagggctgtgaacaagccagcaaggagtgcttattggaagactaagctgtgt---caatggcagcatacagggagctg |
46899245 |
T |
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| Q |
298 |
tccctttggggaggactgtcacttttctcatggagaagcaggtgataataactcatctttgtgttgatttcc |
369 |
Q |
| |
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||||||||||||| |||| ||||| ||||||||||||||||| || |||||||||| | |||| |||||| |
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| T |
46899246 |
tccctttggggagacctgtgactttgctcatggagaagcaggtaatgttaactcatctgtttgttaatttcc |
46899317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 22691790 - 22691750
Alignment:
| Q |
220 |
tagggctgtgaacaagccagctaggggcacttattggaaga |
260 |
Q |
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| T |
22691790 |
taggtctgtgaacaagccagcaaggggcacttactggaaga |
22691750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 19845997 - 19846037
Alignment:
| Q |
220 |
tagggctgtgaacaagccagctaggggcacttattggaaga |
260 |
Q |
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| T |
19845997 |
taggtctgtgaacaagccagcaaggggcacttactggaaga |
19846037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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