View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2806_high_5 (Length: 251)
Name: NF2806_high_5
Description: NF2806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2806_high_5 |
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| [»] scaffold0171 (3 HSPs) |
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| [»] scaffold0181 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 24939823 - 24939589
Alignment:
| Q |
1 |
caccggcttcccctttcttatgcaaaagtctaagaaatctcagagtctcttgttgcctcaagggacgaagttgatcgagggttcttccaccaagaagctc |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24939823 |
caccggcttcccctttcttatccaaaagtctaagaaatcttagagtctcttgttgcctcaagggacgaagttgatcgagggttcttccaccaagaagctc |
24939724 |
T |
|
| Q |
101 |
tgacatgcatatcttcttcacgaacttccagtagtcaccataaggcgtaattattaaaccctttgagccatatgatatgtagtgaactgcagaagttgta |
200 |
Q |
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||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24939723 |
tgacatgcatatcttcttcacaaatttccagtagtcaccataaggtgtaattattaaaccctttgagccatatgatatgtagtgaactgcagaagttgta |
24939624 |
T |
|
| Q |
201 |
aagcggttggagaaggaagtttcgtgagttttaag |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
24939623 |
aagcggttggagaaggaagtttcgtgagttttaag |
24939589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 25168442 - 25168208
Alignment:
| Q |
1 |
caccggcttcccctttcttatgcaaaagtctaagaaatctcagagtctcttgttgcctcaagggacgaagttgatcgagggttcttccaccaagaagctc |
100 |
Q |
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|||||| |||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| |||||||| || ||| || ||||||||||||| |
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| T |
25168442 |
caccggtttcccctttcttctgcaaaagtctaagaaaccttagagtctcttgttgcctcaagggacggagttgatcaagcgttattacaccaagaagctc |
25168343 |
T |
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| Q |
101 |
tgacatgcatatcttcttcacgaacttccagtagtcaccataaggcgtaattattaaaccctttgagccatatgatatgtagtgaactgcagaagttgta |
200 |
Q |
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|||||||||||||||||||||||||| ||| || ||||| |||||||||||||| ||||| ||| | ||||||||||||||| | ||||| | || | |
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| T |
25168342 |
tgacatgcatatcttcttcacgaactgccaataatcaccgtaaggcgtaattatgaaaccttttaatccatatgatatgtaggtagttgcagcatttttt |
25168243 |
T |
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| Q |
201 |
aagcggttggagaaggaagtttcgtgagttttaag |
235 |
Q |
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|||||||| |||||||||||||||||||||||||| |
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| T |
25168242 |
aagcggtttgagaaggaagtttcgtgagttttaag |
25168208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 138
Target Start/End: Original strand, 38808988 - 38809083
Alignment:
| Q |
44 |
agtctcttgttgcctcaagggacgaagttgatcgagggttcttccaccaagaagctctgacatgcata-tcttcttcacgaacttccagtagtcac |
138 |
Q |
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||||||||| |||||||||| || | |||||| || ||||||||||||||||||||||||||||||| | || |||| ||||||||| ||||||| |
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| T |
38808988 |
agtctcttgctgcctcaaggaacagaattgatcaagagttcttccaccaagaagctctgacatgcatattttttttcatgaacttccaatagtcac |
38809083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 3 - 183
Target Start/End: Complemental strand, 10722 - 10542
Alignment:
| Q |
3 |
ccggcttcccctttcttatgcaaaagtctaagaaatctcagagtctcttgttgcctcaagggacgaagttgatcgagggttcttccaccaagaagctctg |
102 |
Q |
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||||||||||||||||| |||| |||||||||||| | || ||||||||||||||||| ||||| | |||||| | |||||||||||||||||||||| |
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| T |
10722 |
ccggcttcccctttcttctgcagaagtctaagaaaccgcacggtctcttgttgcctcaacggacggaattgatcaatagttcttccaccaagaagctctg |
10623 |
T |
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| Q |
103 |
acatgcatatcttcttcacgaacttccagtagtcaccataaggcgtaattattaaaccctttgagccatatgatatgtagt |
183 |
Q |
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||||||||||||| |||| ||||||||| || ||||||||||||| || || ||| ||| |||||||||||||| ||||| |
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| T |
10622 |
acatgcatatctttttcatgaacttccaatattcaccataaggcgcaaacatgaaatcctgtgagccatatgataagtagt |
10542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 24274 - 24040
Alignment:
| Q |
1 |
caccggcttcccctttcttatgcaaaagtctaagaaatctcagagtctcttgttgcctcaagggacgaagttgatcgagggttcttccaccaagaagctc |
100 |
Q |
| |
|
|||||| |||||| ||||| | ||||| |||||| |||| |||||||||||||||||| ||||||| |||||| || |||||||||||||||||||| |
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| T |
24274 |
caccggtttccccattcttcttcaaaacattaagaagcctcaaagtctcttgttgcctcaatggacgaaattgatcaagagttcttccaccaagaagctc |
24175 |
T |
|
| Q |
101 |
tgacatgcatatcttcttcacgaacttccagtagtcaccataaggcgtaattattaaaccctttgagccatatgatatgtagtgaactgcagaagttgta |
200 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||| | || || ||| | |||| ||||||||||| |||| |||| || | || | |
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| T |
24174 |
ggacatgcatatctttttcatgaacttccagtagtcaccataaggtgcaaacataaaatcgtttgcgccatatgataagtagcgaacgacaccatttatt |
24075 |
T |
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| Q |
201 |
aagcggttggagaaggaagtttcgtgagttttaag |
235 |
Q |
| |
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||||| || |||||||||||||| ||||||||||| |
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| T |
24074 |
aagcgattagagaaggaagtttcatgagttttaag |
24040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 235
Target Start/End: Complemental strand, 18860 - 18631
Alignment:
| Q |
6 |
gcttcccctttcttatgcaaaagtctaagaaatctcagagtctcttgttgcctcaagggacgaagttgatcgagggttcttccaccaagaagctctgaca |
105 |
Q |
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|
||||||||||| | ||||||||||||||||| |||| ||| |||| ||||||||| ||| ||| | ||||||||||| || ||||||||||| |||| |
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| T |
18860 |
gcttccccttttgtctgcaaaagtctaagaaacctcatagtttctttttgcctcaaaggaagaaacttgtcgagggttctgccgccaagaagctcagaca |
18761 |
T |
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| Q |
106 |
tgcatatcttcttcacgaacttccagtagtcaccataaggcgtaattattaaaccctttgagccatatgatatgtagtgaactgcagaagttgtaaagcg |
205 |
Q |
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| |||||||| || | |||||||||||| ||||||||||||| || ||| ||| ||||||||||||||| || || ||||| | ||| || ||||||| |
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| T |
18760 |
tacatatcttttttatgaacttccagtattcaccataaggcgcaaatatgaaatcctttgagccatatgttaagttgtgaataactgaacttataaagcg |
18661 |
T |
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| Q |
206 |
gttggagaaggaagtttcgtgagttttaag |
235 |
Q |
| |
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|| |||||| ||| ||||||||||||||| |
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| T |
18660 |
attcgagaagtaagattcgtgagttttaag |
18631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 223
Target Start/End: Original strand, 11444 - 11661
Alignment:
| Q |
6 |
gcttcccctttcttatgcaaaagtctaagaaatctcagagtctcttgttgcctcaagggacgaagttgatcgagggttcttccaccaagaagctctgaca |
105 |
Q |
| |
|
||||| ||| |||| ||||||||| | | ||||||| | |||||||||| |||| ||| | | |||||| || |||||| ||||||||||||||||| |
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| T |
11444 |
gcttctcctatcttctgcaaaagttttaagaatctcaatgactcttgttgcatcaatggaaggaattgatcaagtgttcttttaccaagaagctctgaca |
11543 |
T |
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| Q |
106 |
tgcatatcttcttcacgaacttccagtagtcaccataaggcgtaattattaaaccctttgagccatatgatatgtagtgaactgcagaagttgtaaagcg |
205 |
Q |
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|||| | |||||| || |||||||| ||||||||||| || | || | || ||||||||||||||| ||| | |||||||||| | ||| ||| || |
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| T |
11544 |
tgcacaacttcttaacaaacttccaatagtcaccatagggtgcaaacacaaatccctttgagccatattctatttgctgaactgcagcatttgcaaaacg |
11643 |
T |
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| Q |
206 |
gttggagaaggaagtttc |
223 |
Q |
| |
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||| |||||| ||||||| |
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| T |
11644 |
gttcgagaagaaagtttc |
11661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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