View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2806_low_4 (Length: 338)
Name: NF2806_low_4
Description: NF2806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2806_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 320
Target Start/End: Complemental strand, 2223414 - 2223111
Alignment:
| Q |
17 |
acaaagcaccgcccttgagtcaccacaattcgccactacaatctcctccttccccaccaccaccacagccgccgtcgaacccacggtattcccatcaacc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2223414 |
acaaagcaccgcccttgagtcaccacaattcgccactacaatctcctccttccccaccaccaccacagccgccgtcgaacccacggtattcccatcaacc |
2223315 |
T |
|
| Q |
117 |
tcatcaccacaacttccaccgactccaatttcactatccattttcataaaacaagaacacatagcttcacaccaatccaatccatgattcctcctaccct |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2223314 |
tcatcaccacaacttccaccgactccaatttcactatccatcttcataaaacaagaacacatagcttcacaccaatccaatccatgattcctcctaccct |
2223215 |
T |
|
| Q |
217 |
ccttcacttcctccgccaacaacaagtgcagcctatcacggcaagcattcgccaccgtcataccaccatgaccgtcataaaccgcaaagaaatcataacc |
316 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2223214 |
ccttcacttcctccgccaacaacaagtgcaacctatcacggcaagcattcgccaccgtcataccaccatgaccgtcataaaccgcaaagaaatcataacc |
2223115 |
T |
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| Q |
317 |
gcac |
320 |
Q |
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|||| |
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| T |
2223114 |
gcac |
2223111 |
T |
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