View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2806_low_5 (Length: 275)
Name: NF2806_low_5
Description: NF2806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2806_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 49060699 - 49060963
Alignment:
| Q |
1 |
acccgaggcttcttctgagctgatgggtcctcattgtcattaccattctctttatcctcgtcttcctcttcatcctgatcctttcttttcttagtcagct |
100 |
Q |
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| T |
49060699 |
acccgaggcttcttctgagctgatgggtcctcattgtcattaccattctctttatcctcgtcttcgtcttcatcctgatcctttcttttcttagtcagct |
49060798 |
T |
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| Q |
101 |
ttccattttcatctgaattttctgctcctgcagatcttagtccactgccactgtcagaagtagttttgtctggtttactggttttgtttttctcctttgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49060799 |
ttccattttcatctgaattttctgctcctgcagatcttagtccactgccactgtcagaagtagttttgtctggtttactggttttgtttttctcctttgg |
49060898 |
T |
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| Q |
201 |
atcagacttcttcttcctaattacatgctgccaaatgttctttagctcctctaatctcacaggtt |
265 |
Q |
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| T |
49060899 |
atcagacttcttcttcctaattacatgctgccaaatgttctttagctcctctaatctcacaggtt |
49060963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 47274416 - 47274489
Alignment:
| Q |
7 |
ggcttcttctgagctgatgggtcctcattgtcattaccattctctttatcctcgtcttcctcttcatcctgatc |
80 |
Q |
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| T |
47274416 |
ggcttcttctgagctcatgggtcctcattgtcatgaccattctctttatcctcatctttgtcttcatcctgatc |
47274489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 207 - 265
Target Start/End: Original strand, 47275104 - 47275162
Alignment:
| Q |
207 |
cttcttcttcctaattacatgctgccaaatgttctttagctcctctaatctcacaggtt |
265 |
Q |
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| T |
47275104 |
cttcttcttccgaattacatgctgccaaatggtctttagctcctgtaatctcacaggtt |
47275162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 265
Target Start/End: Original strand, 47280787 - 47280847
Alignment:
| Q |
205 |
gacttcttcttcctaattacatgctgccaaatgttctttagctcctctaatctcacaggtt |
265 |
Q |
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|||| ||| |||| |||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
47280787 |
gactccttattccgaattacatgctgccaaatgttccttagctcctccaatctcacaggtt |
47280847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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