View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2806_low_7 (Length: 250)
Name: NF2806_low_7
Description: NF2806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2806_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 47280626 - 47280847
Alignment:
| Q |
17 |
agtttaaaatgagaaataaaattcggtaaagctcgaggaaattgataggatataaaaatagttctagtgttgcagagagagtgaagaacatactgtcaac |
116 |
Q |
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| T |
47280626 |
agtttaaaatgagaaataaaattcggtaaagctcgaggaaattgataggatataaaaatagttctagtgttgcagagagagtgaagaacatactgtcaac |
47280725 |
T |
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| Q |
117 |
tcctaactgattaacagtttcaagaaacttgcggtgcagctccacagaccaaacaaactgggactccttattccgaattacatgctgccaaatgttcctt |
216 |
Q |
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| T |
47280726 |
tcctaactgattaacagtttcaagaaacttgcggtgcagctccacagaccaaacaaactgggactccttattccgaattacatgctgccaaatgttcctt |
47280825 |
T |
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| Q |
217 |
agctcctccaatctcacaggtt |
238 |
Q |
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| T |
47280826 |
agctcctccaatctcacaggtt |
47280847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 181
Target Start/End: Original strand, 47274917 - 47275075
Alignment:
| Q |
21 |
taaaatgagaaataaaattcggtaaagctcgaggaaattgataggatataaaaatagttctagtgttgcagagagagtgaagaacatactgtcaactcct |
120 |
Q |
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| T |
47274917 |
taaaatgagaaataaaaatcggtcaagctcgaggaaattgataggatataaaaattgttt--gtgttgcggacagagtggagaacatactgtcaatgcct |
47275014 |
T |
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| Q |
121 |
aactgattaacagtttcaagaaacttgcggtgcagctccacagaccaaacaaactgggact |
181 |
Q |
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| T |
47275015 |
aactgattaacagcagcaacaaatttgtggtgcagctccacagaccaaacagactgggact |
47275075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 29 - 172
Target Start/End: Original strand, 49060558 - 49060699
Alignment:
| Q |
29 |
gaaataaaattcggtaaagctcgaggaaattgataggatataaaaatagttctagtgttgcagagagagtgaagaacatactgtcaactcctaactgatt |
128 |
Q |
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| T |
49060558 |
gaaataaaattcagtaaagctcgaggaaattgataagatataaaaattgttt--gtgttgcaggcagagtgaagaacatactgtcaatgcctaactgatt |
49060655 |
T |
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| Q |
129 |
aacagtttcaagaaacttgcggtgcagctccacagaccaaacaa |
172 |
Q |
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| T |
49060656 |
aacagcagcaacaaacttgcggtgcagctccacagaccaaacaa |
49060699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 49060903 - 49060963
Alignment:
| Q |
178 |
gactccttattccgaattacatgctgccaaatgttccttagctcctccaatctcacaggtt |
238 |
Q |
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|||| ||| |||| |||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
49060903 |
gacttcttcttcctaattacatgctgccaaatgttctttagctcctctaatctcacaggtt |
49060963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 238
Target Start/End: Original strand, 47275111 - 47275162
Alignment:
| Q |
187 |
ttccgaattacatgctgccaaatgttccttagctcctccaatctcacaggtt |
238 |
Q |
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| T |
47275111 |
ttccgaattacatgctgccaaatggtctttagctcctgtaatctcacaggtt |
47275162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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