View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2806_low_8 (Length: 245)

Name: NF2806_low_8
Description: NF2806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2806_low_8
NF2806_low_8
[»] chr3 (3 HSPs)
chr3 (75-168)||(45389625-45389718)
chr3 (166-227)||(45389786-45389848)
chr3 (76-163)||(31890592-31890679)
[»] chr8 (4 HSPs)
chr8 (75-144)||(15601857-15601926)
chr8 (75-144)||(15633169-15633238)
chr8 (75-163)||(10970591-10970679)
chr8 (111-163)||(32449214-32449266)
[»] chr4 (1 HSPs)
chr4 (75-163)||(41611228-41611316)


Alignment Details
Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 75 - 168
Target Start/End: Original strand, 45389625 - 45389718
Alignment:
Q  75 caaaatagcaattcccacttcaacagaaagtataccaatcttacaaaattgaaaattatatggtccatatgtagagtatactctaagttttgta 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  45389625 caaaatagcaattcccacttcaacagaaagtataccaatcttacaaaattgaaaattctatggtccatatgtagagtatactctaagttttgta 45389718  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 45389786 - 45389848
Alignment:
Q  166 gtacaatctttgatgtt-ctcaaatttgcaatttcacatgacgctgcaagcatttgggttctc 227  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  45389786 gtacaacctttgatgtttctcaaatttgcaatttcacatgacgctgcaagcatttgggttctc 45389848  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 163
Target Start/End: Complemental strand, 31890679 - 31890592
Alignment:
Q  76 aaaatagcaattcccacttcaacagaaagtataccaatcttacaaaattgaaaattatatggtccatatgtagagtatactctaagtt 163  Q
    ||||||| |||||||||||||||| ||| ||||  ||| |||||||| || ||||| || |||||||||||||||||||||| |||||    
T  31890679 aaaatagaaattcccacttcaacaaaaactatagaaattttacaaaactggaaattctaaggtccatatgtagagtatactcaaagtt 31890592  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 15601857 - 15601926
Alignment:
Q  75 caaaatagcaattcccacttcaacagaaagtataccaatcttacaaaattgaaaattatatggtccatat 144  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| || |||||||||    
T  15601857 caaaatagcaattcccacttcaacagaaagtatacaaatcttacaaaactgaaaattctaaggtccatat 15601926  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 15633169 - 15633238
Alignment:
Q  75 caaaatagcaattcccacttcaacagaaagtataccaatcttacaaaattgaaaattatatggtccatat 144  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||| |||||||| || |||||||||    
T  15633169 caaaatagcaattcccacttcaacagaaagtataaaaatcttacaaaactgaaaattctaaggtccatat 15633238  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 163
Target Start/End: Original strand, 10970591 - 10970679
Alignment:
Q  75 caaaatagcaattcccacttcaacagaaagtataccaatcttacaaaattgaaaattatatggtccatatgtagagtatactctaagtt 163  Q
    ||||||||||||||||| ||||||||||||||||| | |||||||||| |||||||| ||||||| ||  |  ||||||||||||||||    
T  10970591 caaaatagcaattcccagttcaacagaaagtatacaagtcttacaaaactgaaaattttatggtctatcagcggagtatactctaagtt 10970679  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 32449266 - 32449214
Alignment:
Q  111 aatcttacaaaattgaaaattatatggtccatatgtagagtatactctaagtt 163  Q
    |||||||||||||||||||||    |||||||||||||||||| |||||||||    
T  32449266 aatcttacaaaattgaaaattcctaggtccatatgtagagtatgctctaagtt 32449214  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 163
Target Start/End: Original strand, 41611228 - 41611316
Alignment:
Q  75 caaaatagcaattcccacttcaacagaaagtataccaatcttacaaaattgaaaattatatggtccatatgtagagtatactctaagtt 163  Q
    ||||||||||||||||||||||||| |||  |||| |||||||||||| |||||||| || ||||||| ||||||||||| ||||||||    
T  41611228 caaaatagcaattcccacttcaacataaaccatacaaatcttacaaaagtgaaaattctaaggtccatctgtagagtatattctaagtt 41611316  T

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