View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2807_high_10 (Length: 355)

Name: NF2807_high_10
Description: NF2807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2807_high_10
NF2807_high_10
[»] chr5 (20 HSPs)
chr5 (83-339)||(37399133-37399386)
chr5 (83-339)||(37380656-37380906)
chr5 (83-273)||(37825490-37825686)
chr5 (83-190)||(37534677-37534781)
chr5 (83-190)||(37713201-37713305)
chr5 (83-190)||(37595907-37596014)
chr5 (1-82)||(37437681-37437762)
chr5 (83-190)||(37641458-37641562)
chr5 (83-190)||(37441521-37441625)
chr5 (5-82)||(37699141-37699222)
chr5 (232-339)||(37441678-37441782)
chr5 (86-196)||(37411779-37411886)
chr5 (83-171)||(37437278-37437366)
chr5 (83-171)||(37698370-37698458)
chr5 (85-190)||(37704247-37704349)
chr5 (83-190)||(37391420-37391524)
chr5 (186-277)||(37534795-37534889)
chr5 (191-339)||(37391255-37391401)
chr5 (16-82)||(37704630-37704697)
chr5 (38-82)||(37698818-37698859)
[»] chr3 (1 HSPs)
chr3 (83-162)||(14554636-14554715)
[»] chr4 (2 HSPs)
chr4 (5-82)||(16840988-16841071)
chr4 (86-186)||(24216220-24216317)


Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 83 - 339
Target Start/End: Complemental strand, 37399386 - 37399133
Alignment:
Q  83 tttttgaattgtaacaaggcagagttgtcatgtttgttgcacagtgagaaagtgtgggaagtaaaatgagtaatcaacaacaacaagaagaacaagtgaa 182  Q
    |||||||||||||||||||||||| ||||||| | |||||| |||||||||||||  ||||||||||||||||||||||||||||||||   ||||||||    
T  37399386 tttttgaattgtaacaaggcagaggtgtcatgatggttgcatagtgagaaagtgtatgaagtaaaatgagtaatcaacaacaacaagaa---caagtgaa 37399290  T
Q  183 aggtaaaaaaggaccccatttagagcgacttagactaatactctcttaccaatattatttcttttttactttatgatgattttgtatgtaccaatccatt 282  Q
    |  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37399289 atttaaaaaaggaccccatttcgagcgacttagactaatactctcttaccaatattatttcttttttactttatgatgattttgtatgtaccaatccatt 37399190  T
Q  283 acactctagttatttatatgtgaaacataactgaataagtcttggcatgctcttgtt 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37399189 acactctagttatttatatgtgaaacataactgaataagtcttggcatgctcttgtt 37399133  T

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Target: chr5; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 83 - 339
Target Start/End: Complemental strand, 37380906 - 37380656
Alignment:
Q  83 tttttgaattgtaacaaggcagagttgtcatgtttgttgcacagtgagaaagtgtgggaagtaaaatgagtaatcaacaacaacaagaagaacaagtgaa 182  Q
    |||||||| ||||||||||||||  | ||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||   ||||||||    
T  37380906 tttttgaaatgtaacaaggcagatgtatcatgttggttgcacaatgagaaagtgtgggaagtaaaatgagtaagcaacaacaacaagaa---caagtgaa 37380810  T
Q  183 aggtaaaaaaggaccccatttagagcgacttagactaatactctcttaccaatattatttcttttttactttatgatgattttgtatgtaccaatccatt 282  Q
    |||||||||||||||||||||||| ||||||||||| ||||||| ||| ||||||| ||||||||||| |   ||||||| |||||||||||||||||||    
T  37380809 aggtaaaaaaggaccccatttagaacgacttagacttatactctattatcaatattctttcttttttagt---tgatgatgttgtatgtaccaatccatt 37380713  T
Q  283 acactctagttatttatatgtgaaacataactgaataagtcttggcatgctcttgtt 339  Q
    ||||||||| |||||||||  |||||||||| || |||||||||||||||| |||||    
T  37380712 acactctaggtatttatataggaaacataaccgagtaagtcttggcatgctattgtt 37380656  T

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Target: chr5; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 83 - 273
Target Start/End: Original strand, 37825490 - 37825686
Alignment:
Q  83 tttttgaattgtaacaaggcagagttgtcatgtttgttgcacagtgagaaagtgtgggaagtaaaatgagtaatcaacaacaacaag---aagaacaagt 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   ||||| ||||    
T  37825490 tttttgaattgtaacaaggcagagttgtcatgtttgttgcacagtgagaaagtgtaggaagtaaaatgagtaatcaacaacaacaagaacaagaaaaagt 37825589  T
Q  180 gaaaggtaaaaaaggaccccatttagagcgacttagac-taatactctcttaccaatattatttcttttttactttatg--atgattttgtatgtac 273  Q
    |||||||||||||||| |||||||||||  ||||| || ||||||||||||  || |||| |||| ||||| |||||||  ||||||||| ||||||    
T  37825590 gaaaggtaaaaaaggatcccatttagagaaacttacacttaatactctcttctcagtattctttcctttttcctttatgatatgattttggatgtac 37825686  T

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Target: chr5; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 37534677 - 37534781
Alignment:
Q  83 tttttgaattgtaacaaggcagagttgtcatgtttgttgcacagtgagaaagtgtgggaagtaaaatgagtaatcaacaacaacaagaagaacaagtgaa 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||   ||||| |||||||    
T  37534677 tttttgaattgtaacaaggcagagttgtcatgtttgttgcacagtgagaaagtgtaggaagtaaaatgagtaatcaacaacaac---aagaaaaagtgaa 37534773  T
Q  183 aggtaaaa 190  Q
    ||||||||    
T  37534774 aggtaaaa 37534781  T

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Target: chr5; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 37713201 - 37713305
Alignment:
Q  83 tttttgaattgtaacaaggcagagttgtcatgtttgttgcacagtgagaaagtgtgggaagtaaaatgagtaatcaacaacaacaagaagaacaagtgaa 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||   |||||||    
T  37713201 tttttgaattgtaacaaggcagagttgtcatgtttgttgcacagtgagaaagtgtgggaagtaaaatgagtaagcaacaacaacgagaag---aagtgaa 37713297  T
Q  183 aggtaaaa 190  Q
    ||||||||    
T  37713298 aggtaaaa 37713305  T

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Target: chr5; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 37595907 - 37596014
Alignment:
Q  83 tttttgaattgtaacaaggcagagttgtcatgtttgttgcacagtgagaaagtgtgggaagtaaaatgagtaatcaacaacaacaagaagaacaagtgaa 182  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||| ||||| |||||||    
T  37595907 tttttgaattgtaacaaggcagagttgtcatgtttgttgcacaatgagaaagtgtaggaagtaaaatgagtaagcagcaacaacaacaagaaaaagtgaa 37596006  T
Q  183 aggtaaaa 190  Q
    ||||||||    
T  37596007 aggtaaaa 37596014  T

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Target: chr5; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 37437681 - 37437762
Alignment:
Q  1 catattggaagaccaagacttttcgaacgtaattagcaagttggaatcttattgcaagttgtgataataagataacaaattc 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37437681 catattggaagaccaagacttttcgaacgtaattagcaagttggaatcttattgcaagttgtgataataagataacaaattc 37437762  T

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Target: chr5; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 37641458 - 37641562
Alignment:
Q  83 tttttgaattgtaacaaggcagagttgtcatgtttgttgcacagtgagaaagtgtgggaagtaaaatgagtaatcaacaacaacaagaagaacaagtgaa 182  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||   |||||||    
T  37641458 tttttgaattgtaacaaggcagaggtgtcatgttggttgcacagtgagaaagtgtaggaagtaaaatgagtaatcaacaacaacaacaag---aagtgaa 37641554  T
Q  183 aggtaaaa 190  Q
    ||||||||    
T  37641555 aggtaaaa 37641562  T

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Target: chr5; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 37441521 - 37441625
Alignment:
Q  83 tttttgaattgtaacaaggcagagttgtcatgtttgttgcacagtgagaaagtgtgggaagtaaaatgagtaatcaacaacaacaagaagaacaagtgaa 182  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||| | ||||||||||||||||   | || |||||||||||||| |||||    
T  37441521 tttttgaattgtaacaaggcagaggtgtcatgtttgtttcacagtgagaaagtataggaagtaaaatgagta---agcagcaacaagaagaacatgtgaa 37441617  T
Q  183 aggtaaaa 190  Q
    ||||||||    
T  37441618 aggtaaaa 37441625  T

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Target: chr5; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 37699141 - 37699222
Alignment:
Q  5 ttggaagaccaagacttttcgaacgtaattagca----agttggaatcttattgcaagttgtgataataagataacaaattc 82  Q
    |||||| |||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||    
T  37699141 ttggaaaaccaagacttttcgaacgtaattagcactaaagttggaatcttattgcaagttgtgataataagataacaaattc 37699222  T

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Target: chr5; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 232 - 339
Target Start/End: Original strand, 37441678 - 37441782
Alignment:
Q  232 caatattatttcttttttactttatgatgattttgtatgtaccaatccattacactctagttatttatatgtgaaacataactgaataagtcttggcatg 331  Q
    ||||||| ||||||||||||||   || |||| ||||||||||||||||||| ||| |||||||||||||| |||||| | | ||| |||||||||||||    
T  37441678 caatattctttcttttttactt---gaggattatgtatgtaccaatccattaaactgtagttatttatatgggaaacacagccgaacaagtcttggcatg 37441774  T
Q  332 ctcttgtt 339  Q
    ||||||||    
T  37441775 ctcttgtt 37441782  T

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Target: chr5; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 86 - 196
Target Start/End: Complemental strand, 37411886 - 37411779
Alignment:
Q  86 ttgaattgtaacaaggcagagttgtcatgtttgttgcacagtgagaaagtgtgggaagtaaaatgagtaatcaacaacaacaagaagaacaagtgaaagg 185  Q
    |||||||||||||||||| || ||||||| | |||||| | |||||| |||| ||||||||||||||||   |||| || ||| ||||||||||||||||    
T  37411886 ttgaattgtaacaaggcaaagctgtcatgatagttgcataatgagaaggtgtaggaagtaaaatgagta---aacagcagcaacaagaacaagtgaaagg 37411790  T
Q  186 taaaaaaggac 196  Q
    ||||| |||||    
T  37411789 taaaataggac 37411779  T

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Target: chr5; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 37437278 - 37437366
Alignment:
Q  83 tttttgaattgtaacaaggcagagttgtcatgtttgttgcacagtgagaaagtgtgggaagtaaaatgagtaatcaacaacaacaagaa 171  Q
    |||||||||||||| ||||||||| ||||||| | |||||| | |||||||||||||| |||||| ||||||| |||||||||| ||||    
T  37437278 tttttgaattgtaataaggcagaggtgtcatgatggttgcataatgagaaagtgtgggtagtaaagtgagtaagcaacaacaacgagaa 37437366  T

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Target: chr5; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 37698370 - 37698458
Alignment:
Q  83 tttttgaattgtaacaaggcagagttgtcatgtttgttgcacagtgagaaagtgtgggaagtaaaatgagtaatcaacaacaacaagaa 171  Q
    |||||||||||||||||||||||  ||||||| | |||||| | |||||  |||| ||||||||||||||||| |||||||||||||||    
T  37698370 tttttgaattgtaacaaggcagaactgtcatgatggttgcataatgagagtgtgtaggaagtaaaatgagtaagcaacaacaacaagaa 37698458  T

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Target: chr5; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 190
Target Start/End: Original strand, 37704247 - 37704349
Alignment:
Q  85 tttgaattgtaacaaggcagagttgtcatgtttgttgcacagtgagaaagtgtgggaagtaaaatgagtaatcaacaacaacaagaagaacaagtgaaag 184  Q
    |||||||||||||||||| ||| | ||||||| | |||||| ||||||||||| ||||||||||||||||| || ||| |||   ||||||||||||||     
T  37704247 tttgaattgtaacaaggcggagctatcatgttggctgcacaatgagaaagtgtaggaagtaaaatgagtaagcagcaataac---aagaacaagtgaaaa 37704343  T
Q  185 gtaaaa 190  Q
    ||||||    
T  37704344 gtaaaa 37704349  T

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Target: chr5; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 37391524 - 37391420
Alignment:
Q  83 tttttgaattgtaacaaggcagagttgtcatgtttgttgcacagtgagaaagtgtgggaagtaaaatgagtaatcaacaacaacaagaagaacaagtgaa 182  Q
    ||||||||||||| |||||||||| | |||||   |||||||| ||||| ||| | ||||||||||||||||| ||||||||||   | |||||||||||    
T  37391524 tttttgaattgtagcaaggcagagctatcatgaaggttgcacaatgagagagtataggaagtaaaatgagtaagcaacaacaac---atgaacaagtgaa 37391428  T
Q  183 aggtaaaa 190  Q
    ||||||||    
T  37391427 aggtaaaa 37391420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 277
Target Start/End: Original strand, 37534795 - 37534889
Alignment:
Q  186 taaaaaaggaccccatttagagcgacttagact-aatactctcttaccaatattatttcttttttactttatg--atgattttgtatgtaccaat 277  Q
    |||||||||| |||||||||||  ||||| ||| |||||||||||  || ||||||||| ||||| |||||||  ||||||||| ||||||||||    
T  37534795 taaaaaaggatcccatttagagaaacttacacttaatactctcttctcagtattatttcctttttcctttatgatatgattttggatgtaccaat 37534889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 339
Target Start/End: Complemental strand, 37391401 - 37391255
Alignment:
Q  191 aaggaccccatttagagcgacttagact-aatactctcttaccaatattatttcttttttactttatgatgattttgtatgtaccaatccattacactct 289  Q
    |||||||||||||||||| ||||| ||| || | ||||||  | ||| | |||| |||||| ||   |||||||||| ||||||||||  ||||  |||     
T  37391401 aaggaccccatttagagcaacttacacttaaaaatctcttctcgatagtctttcgtttttagtt---gatgattttgaatgtaccaattgattagcctca 37391305  T
Q  290 agttatttatatgtgaaacataactgaataagtcttggcatgctcttgtt 339  Q
    |  ||| |||||  |||||||||| ||| |||||||||||||||||||||    
T  37391304 atctatatatataggaaacataaccgaacaagtcttggcatgctcttgtt 37391255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 37704630 - 37704697
Alignment:
Q  16 agacttttcgaacgtaattagca----agttggaatcttattgcaagttgtgataataagataacaaattc 82  Q
    |||||||| ||||||||||||||    ||||||||||||||| |||||||||   ||||||||||||||||    
T  37704630 agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtg---ataagataacaaattc 37704697  T

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Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 37698818 - 37698859
Alignment:
Q  38 aagttggaatcttattgcaagttgtgataataagataacaaattc 82  Q
    ||||||||||||||||||||||||||   ||||||||||||||||    
T  37698818 aagttggaatcttattgcaagttgtg---ataagataacaaattc 37698859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 83 - 162
Target Start/End: Original strand, 14554636 - 14554715
Alignment:
Q  83 tttttgaattgtaacaaggcagagttgtcatgtttgttgcacagtgagaaagtgtgggaagtaaaatgagtaatcaacaa 162  Q
    |||||||||||||||||||||||| ||||||||| |||||||| ||||||||| | ||||||||||||||||| ||||||    
T  14554636 tttttgaattgtaacaaggcagaggtgtcatgttggttgcacaatgagaaagtataggaagtaaaatgagtaagcaacaa 14554715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 16841071 - 16840988
Alignment:
Q  5 ttggaagaccaagacttttcgaacgtaattagc---aagttggaatcttattgcaagttgtga---taataagataacaaattc 82  Q
    ||||||||||||||||||| |||||||||||||   |||||||||||||||||||||||||||   ||||||||||||||||||    
T  16841071 ttggaagaccaagactttttgaacgtaattagcactaagttggaatcttattgcaagttgtgatattaataagataacaaattc 16840988  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 186
Target Start/End: Complemental strand, 24216317 - 24216220
Alignment:
Q  86 ttgaattgtaacaaggcagagttgtcatgtttgttgcacagtgagaaagtgtgggaagtaaaatgagtaatcaacaacaacaagaagaacaagtgaaagg 185  Q
    |||||||||||||| |||||  ||||||| | |||||| | |||| ||||||  |||||||||||||||| ||||||||||   | ||||||||||||||    
T  24216317 ttgaattgtaacaatgcagaactgtcatgatggttgcagaatgagtaagtgtaagaagtaaaatgagtaagcaacaacaac---atgaacaagtgaaagg 24216221  T

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