View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2807_high_12 (Length: 339)

Name: NF2807_high_12
Description: NF2807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2807_high_12
NF2807_high_12
[»] chr5 (17 HSPs)
chr5 (1-332)||(37437251-37437582)
chr5 (148-332)||(37698343-37698527)
chr5 (156-332)||(37713174-37713350)
chr5 (5-138)||(37704379-37704512)
chr5 (159-330)||(37641433-37641604)
chr5 (156-332)||(37534650-37534826)
chr5 (5-128)||(37698571-37698694)
chr5 (166-332)||(37595880-37596049)
chr5 (156-329)||(37391375-37391548)
chr5 (170-330)||(37704220-37704380)
chr5 (209-329)||(37380810-37380930)
chr5 (213-330)||(37825465-37825582)
chr5 (156-329)||(37441499-37441669)
chr5 (209-329)||(37399290-37399410)
chr5 (159-299)||(37411743-37411883)
chr5 (166-332)||(37430307-37430473)
chr5 (5-62)||(37698974-37699033)
[»] chr4 (3 HSPs)
chr4 (148-332)||(16841305-16841489)
chr4 (166-330)||(24216181-24216345)
chr4 (72-140)||(16841203-16841274)
[»] chr3 (1 HSPs)
chr3 (156-326)||(14554615-14554782)


Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 37437582 - 37437251
Alignment:
Q  1 cattaaaataagggaatagctagactgaatttgtaaacaatctaataagtcagactttttggtccttgccccttagtttcaggttatgtttcctatataa 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37437582 cattaaaacaagggaatagctagactgaatttgtaaacaatctaataagtcagactttttggtccttgccccttagtttcaagttatgtttcctatataa 37437483  T
Q  101 atagaggctaatcatttggtatatcctaaatcatcaaagtnnnnnnngagaatcggtgtaagttgctctaaatggggtccttttttattctcttgcctta 200  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  37437482 atagaggctaatcatttggtatatcctaaatcatcaaagtaaaaaaagagaatcggtgtaagttgctctaaatggggtccttttttattcttttgccttg 37437383  T
Q  201 tttttcccttcacttgttctcgttgttgttgcttactcactttactacccacactttctcattatgcaaccatcatgacacctctgccttattacaattt 300  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  37437382 ttttgcccttcacttgttctcgttgttgttgcttactcactttactacccacactttctcattatgcaaccatcatgacacctctgccttattacaattc 37437283  T
Q  301 aaaaactctttttctgtcaacacttcatctca 332  Q
    ||||||||||||  | ||||||||||||||||    
T  37437282 aaaaactcttttcttctcaacacttcatctca 37437251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 148 - 332
Target Start/End: Complemental strand, 37698527 - 37698343
Alignment:
Q  148 gagaatcggtgtaagttgctctaaatggggtccttttttattctcttgccttatttttcccttcacttgttctcgttgttgttgcttactcactttacta 247  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||| |||| |||||||||||||||||| ||||||     
T  37698527 gagaatcggtgtaagttgctctaaatggggtccttttttattctattgccttattttgcctttcactttttcttgttgttgttgcttactcattttactt 37698428  T
Q  248 cccacactttctcattatgcaaccatcatgacacctctgccttattacaatttaaaaactctttttctgtcaacacttcatctca 332  Q
    || ||||  ||||||||||||||||||||||||  |||||||| |||||||| |||||||| ||||| || |||||||| |||||    
T  37698427 cctacacactctcattatgcaaccatcatgacagttctgccttgttacaattcaaaaactcattttcagttaacacttcgtctca 37698343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 156 - 332
Target Start/End: Complemental strand, 37713350 - 37713174
Alignment:
Q  156 gtgtaagttgctctaaatggggtccttttttattctcttgccttatttttcccttcacttgttctcgttgttgttgcttactcactttactacccacact 255  Q
    ||||||||| ||||||||||| |||||||||||||  |||||||||||| || ||||||| ||||||||||||||||||||||| |||||| ||||||||    
T  37713350 gtgtaagtttctctaaatgggatccttttttattccattgccttattttacctttcacttcttctcgttgttgttgcttactcattttacttcccacact 37713251  T
Q  256 ttctcattatgcaaccatcatgacacctctgccttattacaatttaaaaactctttttctgtcaacacttcatctca 332  Q
    |||||| | |||||| | ||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  37713250 ttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaacacttcatctca 37713174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 37704512 - 37704379
Alignment:
Q  5 aaaataagggaatagctagactgaatttgtaaacaatctaataagtcagactttttggtccttgccccttagtttcaggttatgtttcctatataaatag 104  Q
    ||||||||||||||  |||||| |||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704512 aaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggtccttgccccttagtttcaggttatgtttcctatataaatag 37704413  T
Q  105 aggctaatcatttggtatatcctaaatcatcaaa 138  Q
    |||||||||| |||||||||||||||||||||||    
T  37704412 aggctaatcaattggtatatcctaaatcatcaaa 37704379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 159 - 330
Target Start/End: Complemental strand, 37641604 - 37641433
Alignment:
Q  159 taagttgctctaaatggggtccttttttattctcttgccttatttttcccttcacttgttctcgttgttgttgcttactcactttactacccacactttc 258  Q
    |||||| ||||||||||| |||||||||||||  |||||||||||| || ||||||| || | |||||||||| ||||||| |||||| || ||||||||    
T  37641604 taagtttctctaaatgggatccttttttattccattgccttattttacctttcacttcttgttgttgttgttgattactcattttacttcctacactttc 37641505  T
Q  259 tcattatgcaaccatcatgacacctctgccttattacaatttaaaaactctttttctgtcaacacttcatct 330  Q
    ||| | |||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  37641504 tcactgtgcaaccaacatgacacctctgccttgttacaattcaaaaactctttttctgtcaacacttcatct 37641433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 156 - 332
Target Start/End: Complemental strand, 37534826 - 37534650
Alignment:
Q  156 gtgtaagttgctctaaatggggtccttttttattctcttgccttatttttcccttcacttgttctcgttgttgttgcttactcactttactacccacact 255  Q
    ||||||||| ||||||||||| |||||||||||||  |||||||||||| || ||||||| |||| |||||||||| ||||||| |||||| || |||||    
T  37534826 gtgtaagtttctctaaatgggatccttttttattccattgccttattttacctttcactttttcttgttgttgttgattactcattttacttcctacact 37534727  T
Q  256 ttctcattatgcaaccatcatgacacctctgccttattacaatttaaaaactctttttctgtcaacacttcatctca 332  Q
    |||||| | |||||| | ||||||| ||||||||| |||||||| ||||||||||||||||||| ||||||||||||    
T  37534726 ttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcagcacttcatctca 37534650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 37698694 - 37698571
Alignment:
Q  5 aaaataagggaatagctagactgaatttgtaaacaatctaataagtcagactttttggtccttgccccttagtttcaggttatgtttcctatataaatag 104  Q
    ||||||||||||||  |||||| ||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  37698694 aaaataagggaatacttagactcaatttgtaaacaatctaataagtcaaactttttggtcctttccccgtagtttcaggttatgtttcctatataaatag 37698595  T
Q  105 aggctaatcatttggtatatccta 128  Q
    |||||||||| |||||||||||||    
T  37698594 aggctaatcaattggtatatccta 37698571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 166 - 332
Target Start/End: Complemental strand, 37596049 - 37595880
Alignment:
Q  166 ctctaaatggggtccttttttattctcttgccttatttttcccttcacttgttctcgttgttgttgct---tactcactttactacccacactttctcat 262  Q
    ||||||||||| |||||||||||||  |||||||||||| || ||||||| |||| ||||||||||||   |||||| |||||| || ||||||||||||    
T  37596049 ctctaaatgggatccttttttattccattgccttattttacctttcactttttcttgttgttgttgctgcttactcattttacttcctacactttctcat 37595950  T
Q  263 tatgcaaccatcatgacacctctgccttattacaatttaaaaactctttttctgtcaacacttcatctca 332  Q
    | |||||| | ||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  37595949 tgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaacacttcatctca 37595880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 156 - 329
Target Start/End: Original strand, 37391375 - 37391548
Alignment:
Q  156 gtgtaagttgctctaaatggggtccttttttattctcttgccttatttttcccttcacttgttctcgttgttgttgcttactcactttactacccacact 255  Q
    ||||||||||||||||||||||||||| |||||| | |||||||||||| || |||||||||||  |||||||||||||||||| |||||| || | |||    
T  37391375 gtgtaagttgctctaaatggggtccttgtttattttattgccttattttacctttcacttgttcatgttgttgttgcttactcattttacttcctatact 37391474  T
Q  256 ttctcattatgcaaccatcatgacacctctgccttattacaatttaaaaactctttttctgtcaacacttcatc 329  Q
     ||||||| ||||||| |||||| | |||||||||  ||||||| |||||||| |||| |||||||||||||||    
T  37391475 ctctcattgtgcaaccttcatgatagctctgccttgctacaattcaaaaactcattttttgtcaacacttcatc 37391548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 170 - 330
Target Start/End: Complemental strand, 37704380 - 37704220
Alignment:
Q  170 aaatggggtccttttttattctcttgccttatttttcccttcacttgttctcgttgttgttgcttactcactttactacccacactttctcattatgcaa 269  Q
    ||||| |||||||||||||||| |||||||||||| |  |||||||||||| ||| ||| |||||||||| |||||| || ||||||||||||| ||||     
T  37704380 aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag 37704281  T
Q  270 ccatcatgacacctctgccttattacaatttaaaaactctttttctgtcaacacttcatct 330  Q
    ||| ||||| | ||| ||||| |||||||| ||| |||| |||||||||||||||||||||    
T  37704280 ccaacatgatagctccgccttgttacaattcaaacactcattttctgtcaacacttcatct 37704220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 209 - 329
Target Start/End: Original strand, 37380810 - 37380930
Alignment:
Q  209 ttcacttgttctcgttgttgttgcttactcactttactacccacactttctcattatgcaaccatcatgacacctctgccttattacaatttaaaaactc 308  Q
    |||||||||||| |||||||||||||||||| |||||| |||||||||||||||| |||||||| ||||| || |||||||| ||||| || ||||||||    
T  37380810 ttcacttgttcttgttgttgttgcttactcattttacttcccacactttctcattgtgcaaccaacatgatacatctgccttgttacatttcaaaaactc 37380909  T
Q  309 tttttctgtcaacacttcatc 329  Q
     |||||| |||||||||||||    
T  37380910 attttctttcaacacttcatc 37380930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 213 - 330
Target Start/End: Complemental strand, 37825582 - 37825465
Alignment:
Q  213 cttgttctcgttgttgttgcttactcactttactacccacactttctcattatgcaaccatcatgacacctctgccttattacaatttaaaaactctttt 312  Q
    |||||||| |||||||||| ||||||| |||||| || ||||||||||| | |||||| | ||||||| ||||||||| |||||||| ||||||||||||    
T  37825582 cttgttcttgttgttgttgattactcattttacttcctacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttt 37825483  T
Q  313 tctgtcaacacttcatct 330  Q
    ||||||||||||||||||    
T  37825482 tctgtcaacacttcatct 37825465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 156 - 329
Target Start/End: Complemental strand, 37441669 - 37441499
Alignment:
Q  156 gtgtaagttgctctaaatggggtccttttttattctcttgccttatttttcccttcacttgttctcgttgttgttgcttactcactttactacccacact 255  Q
    ||||||||  ||||||||||| |||||||||||| | |||||||||||| || ||||| ||||||  |||||| |||||||||| |||||| || | |||    
T  37441669 gtgtaagtatctctaaatggg-tccttttttattttattgccttattttacctttcacatgttcttcttgttgctgcttactcattttacttcctatact 37441571  T
Q  256 ttctcattatgcaaccatcatgacacctctgccttattacaatttaaaaactctttttctgtcaacacttcatc 329  Q
    |||||| | || ||| | ||||||||||||||||| |||||||| ||||||||  |||| ||||||||||||||    
T  37441570 ttctcactgtgaaacaaacatgacacctctgccttgttacaattcaaaaactc--tttcagtcaacacttcatc 37441499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 209 - 329
Target Start/End: Original strand, 37399290 - 37399410
Alignment:
Q  209 ttcacttgttctcgttgttgttgcttactcactttactacccacactttctcattatgcaaccatcatgacacctctgccttattacaatttaaaaactc 308  Q
    |||||||||||| |||||||||| ||||||| |||||| |  ||||||||||| |||||||||||||||||||||||||||| |||||||| ||||| ||    
T  37399290 ttcacttgttcttgttgttgttgattactcattttacttcatacactttctcactatgcaaccatcatgacacctctgccttgttacaattcaaaaattc 37399389  T
Q  309 tttttctgtcaacacttcatc 329  Q
     |||| |||  ||||||||||    
T  37399390 attttttgttgacacttcatc 37399410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 159 - 299
Target Start/End: Original strand, 37411743 - 37411883
Alignment:
Q  159 taagttgctctaaatggggtccttttttattctcttgccttatttttcccttcacttgttctcgttgttgttgcttactcactttactacccacactttc 258  Q
    ||||||||||||||||||||||| |||| |||| ||| | |||||| || |||||||||||| |||| || || ||||||| |||||| || |||| |||    
T  37411743 taagttgctctaaatggggtcctgttttgttctattgtcctattttacctttcacttgttcttgttgctgctgtttactcattttacttcctacaccttc 37411842  T
Q  259 tcattatgcaaccatcatgacacctctgccttattacaatt 299  Q
    |||||||||||| ||||||||| || |||||| ||||||||    
T  37411843 tcattatgcaactatcatgacagctttgccttgttacaatt 37411883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 166 - 332
Target Start/End: Complemental strand, 37430473 - 37430307
Alignment:
Q  166 ctctaaatggggtccttttttattctcttgccttatttttcccttcacttgttctcgttgttgttgcttactcactttactacccacactttctcattat 265  Q
    ||||||||||||||||||| | |||| || |||||| || || |||||||||||| |||| || |||| ||||  |||||| || | || || ||| | |    
T  37430473 ctctaaatggggtccttttgttttctatttccttatcttgcctttcacttgttcttgttgatgctgctaactctttttacttcctatacattttcaatgt 37430374  T
Q  266 gcaaccatcatgacacctctgccttattacaatttaaaaactctttttctgtcaacacttcatctca 332  Q
    |||| ||||||||||  |||||||| |||||||| || || || |||| | ||||||||||||||||    
T  37430373 gcaagcatcatgacagttctgccttgttacaattcaagaattcattttttatcaacacttcatctca 37430307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 37699033 - 37698974
Alignment:
Q  5 aaaataagggaatagctagactgaat--ttgtaaacaatctaataagtcagactttttgg 62  Q
    |||||||||||||| ||||||| |||  |||||||||||||||||| ||| |||||||||    
T  37699033 aaaataagggaatacctagactcaatgtttgtaaacaatctaataactcaaactttttgg 37698974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 148 - 332
Target Start/End: Original strand, 16841305 - 16841489
Alignment:
Q  148 gagaatcggtgtaagttgctctaaatggggtccttttttattctcttgccttatttttcccttcacttgttctcgttgttgttgcttactcactttacta 247  Q
    ||||||||| |||||||||||||||||||||||||||||||| | ||||||| |||| |||||||||||||||   || || |||||||||||||||||     
T  16841305 gagaatcggagtaagttgctctaaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttactt 16841404  T
Q  248 cccacactttctcattatgcaaccatcatgacacctctgccttattacaatttaaaaactctttttctgtcaacacttcatctca 332  Q
    | |||||||| ||||| |||||||| ||||||| |||||| || ||||| || |||||||| |||||||||||||||||||||||    
T  16841405 cacacactttgtcattctgcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatctca 16841489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 166 - 330
Target Start/End: Original strand, 24216181 - 24216345
Alignment:
Q  166 ctctaaatggggtccttttttattctcttgccttatttttcccttcacttgttctcgttgttgttgcttactcactttactacccacactttctcattat 265  Q
    ||||| ||||| ||||||||||||||  ||||| ||||  || |||||||||||  |||||||||||||||||| |||||| |  |||||| |||||| |    
T  24216181 ctctatatgggttccttttttattctaatgcctcatttgacctttcacttgttcatgttgttgttgcttactcattttacttcttacacttactcattct 24216280  T
Q  266 gcaaccatcatgacacctctgccttattacaatttaaaaactctttttctgtcaacacttcatct 330  Q
    |||||||||||||||  ||||| || |||||||| || ||||| |||  ||||||||||||||||    
T  24216281 gcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacacttcatct 24216345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 16841203 - 16841274
Alignment:
Q  72 cttagtttcaggttatgtttcctatataaata---gaggctaatcatttggtatatcctaaatcatcaaagt 140  Q
    ||||||||||||||||||||||||||||||||   ||||||||||| |||||||||| ||||||||||||||    
T  16841203 cttagtttcaggttatgtttcctatataaatagaggaggctaatcagttggtatatcgtaaatcatcaaagt 16841274  T

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Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 156 - 326
Target Start/End: Complemental strand, 14554782 - 14554615
Alignment:
Q  156 gtgtaagttgctctaaatggggtccttttttattctcttgccttatttttcccttcacttgttctcgttgttgttgcttactcactttactacccacact 255  Q
    ||||||||| ||||||||||| |||||||||||||| |||||||||||| || ||||||| ||||   | |||||||||||||| |||||| || | |||    
T  14554782 gtgtaagtttctctaaatgggatccttttttattctattgccttattttacctttcactttttct---tattgttgcttactcattttacttcctatact 14554686  T
Q  256 ttctcattatgcaaccatcatgacacctctgccttattacaatttaaaaactctttttctgtcaacacttc 326  Q
    |||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  14554685 ttctcattgtgcaaccaacatgacacctctgccttgttacaattcaaaaactctttttctgtcaacacttc 14554615  T

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