View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2807_high_23 (Length: 243)

Name: NF2807_high_23
Description: NF2807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2807_high_23
NF2807_high_23
[»] scaffold0483 (1 HSPs)
scaffold0483 (170-211)||(3640-3681)
[»] scaffold0109 (1 HSPs)
scaffold0109 (170-211)||(48480-48521)
[»] chr8 (2 HSPs)
chr8 (170-211)||(6787810-6787851)
chr8 (170-211)||(6765380-6765421)
[»] chr2 (1 HSPs)
chr2 (170-211)||(28620431-28620472)
[»] scaffold0018 (1 HSPs)
scaffold0018 (170-211)||(125988-126029)
[»] chr7 (2 HSPs)
chr7 (174-211)||(20027779-20027816)
chr7 (106-142)||(20027893-20027929)
[»] chr4 (1 HSPs)
chr4 (170-211)||(14694239-14694280)
[»] chr6 (1 HSPs)
chr6 (170-211)||(14647765-14647806)


Alignment Details
Target: scaffold0483 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 3640 - 3681
Alignment:
Q  170 tagttaatgattaacaaatgattgaatagtaaaatgaacatt 211  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  3640 tagttaatgattaacaaatgattgaatagcaaaatgaacatt 3681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 48480 - 48521
Alignment:
Q  170 tagttaatgattaacaaatgattgaatagtaaaatgaacatt 211  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  48480 tagttaatgattaacaaatgattgaatagcaaaatgaacatt 48521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 6787851 - 6787810
Alignment:
Q  170 tagttaatgattaacaaatgattgaatagtaaaatgaacatt 211  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  6787851 tagttaatgattaataaatgattgaatagtaaaatgaacatt 6787810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 6765421 - 6765380
Alignment:
Q  170 tagttaatgattaacaaatgattgaatagtaaaatgaacatt 211  Q
    |||||||||||||| ||||||||||||| |||||||||||||    
T  6765421 tagttaatgattaataaatgattgaataataaaatgaacatt 6765380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 28620472 - 28620431
Alignment:
Q  170 tagttaatgattaacaaatgattgaatagtaaaatgaacatt 211  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  28620472 tagttaatgattaacaaataattgaatagtaaaatgaacatt 28620431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 125988 - 126029
Alignment:
Q  170 tagttaatgattaacaaatgattgaatagtaaaatgaacatt 211  Q
    |||||||| |||||||||||||||||||| ||||||||||||    
T  125988 tagttaattattaacaaatgattgaatagcaaaatgaacatt 126029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 20027816 - 20027779
Alignment:
Q  174 taatgattaacaaatgattgaatagtaaaatgaacatt 211  Q
    |||||||||| |||||||||||||||||||||||||||    
T  20027816 taatgattaataaatgattgaatagtaaaatgaacatt 20027779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 20027929 - 20027893
Alignment:
Q  106 ttctttcaatttttgtgtttgaactgacatatttctt 142  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  20027929 ttctttcaatttttgtgtttgagctgccatatttctt 20027893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 14694239 - 14694280
Alignment:
Q  170 tagttaatgattaacaaatgattgaatagtaaaatgaacatt 211  Q
    ||||||||||||||||||||||||||||  ||||||||||||    
T  14694239 tagttaatgattaacaaatgattgaataacaaaatgaacatt 14694280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 14647765 - 14647806
Alignment:
Q  170 tagttaatgattaacaaatgattgaatagtaaaatgaacatt 211  Q
    |||||||||||||||||||||||||| |  ||||||||||||    
T  14647765 tagttaatgattaacaaatgattgaaaaacaaaatgaacatt 14647806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University