View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2807_high_3 (Length: 443)

Name: NF2807_high_3
Description: NF2807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2807_high_3
NF2807_high_3
[»] chr4 (33 HSPs)
chr4 (18-432)||(37179634-37180048)
chr4 (18-157)||(37189806-37189945)
chr4 (266-384)||(32055337-32055456)
chr4 (18-107)||(37181689-37181778)
chr4 (19-107)||(37187642-37187730)
chr4 (266-381)||(39827145-39827261)
chr4 (274-383)||(42370318-42370427)
chr4 (230-383)||(44690222-44690377)
chr4 (267-381)||(24369401-24369516)
chr4 (264-379)||(50343831-50343946)
chr4 (288-376)||(44670849-44670937)
chr4 (304-383)||(53737829-53737908)
chr4 (237-408)||(41370136-41370303)
chr4 (237-379)||(50086376-50086518)
chr4 (285-383)||(23016238-23016336)
chr4 (293-379)||(41468080-41468166)
chr4 (266-375)||(10095637-10095746)
chr4 (237-380)||(47560621-47560763)
chr4 (288-380)||(50774956-50775048)
chr4 (264-379)||(28005238-28005353)
chr4 (237-354)||(24324196-24324313)
chr4 (276-380)||(54700851-54700953)
chr4 (307-383)||(53919860-53919936)
chr4 (285-363)||(16822280-16822358)
chr4 (296-354)||(33982446-33982504)
chr4 (293-363)||(49144775-49144845)
chr4 (311-352)||(2063498-2063539)
chr4 (267-380)||(53261553-53261666)
chr4 (303-383)||(31871089-31871169)
chr4 (304-380)||(41956465-41956541)
chr4 (285-380)||(42956987-42957083)
chr4 (304-383)||(49446628-49446708)
chr4 (304-364)||(50115058-50115118)
[»] chr1 (34 HSPs)
chr1 (266-383)||(36321622-36321739)
chr1 (266-384)||(4521005-4521123)
chr1 (276-406)||(4771995-4772121)
chr1 (285-380)||(46370828-46370924)
chr1 (266-381)||(33744132-33744247)
chr1 (285-380)||(36621928-36622023)
chr1 (293-383)||(4039626-4039716)
chr1 (281-380)||(48811928-48812027)
chr1 (237-342)||(15549640-15549745)
chr1 (291-383)||(40570681-40570774)
chr1 (304-375)||(7481409-7481481)
chr1 (237-381)||(17554852-17554996)
chr1 (288-382)||(17112696-17112793)
chr1 (261-380)||(37976823-37976941)
chr1 (266-363)||(26322612-26322710)
chr1 (306-409)||(39973862-39973961)
chr1 (306-379)||(2633027-2633100)
chr1 (266-380)||(8836490-8836602)
chr1 (306-381)||(34445663-34445738)
chr1 (304-383)||(45584531-45584610)
chr1 (237-355)||(50670365-50670482)
chr1 (285-355)||(9221239-9221309)
chr1 (304-382)||(40203113-40203191)
chr1 (306-383)||(3047859-3047936)
chr1 (272-381)||(37705871-37705980)
chr1 (316-383)||(34861259-34861326)
chr1 (285-374)||(28672303-28672393)
chr1 (306-379)||(64863-64936)
chr1 (285-382)||(3755944-3756041)
chr1 (309-342)||(35438069-35438102)
chr1 (266-379)||(46830129-46830242)
chr1 (339-383)||(1048739-1048783)
chr1 (304-380)||(25302067-25302143)
chr1 (267-383)||(48947196-48947312)
[»] chr8 (28 HSPs)
chr8 (264-408)||(7513290-7513430)
chr8 (275-408)||(36348494-36348624)
chr8 (267-381)||(11077913-11078027)
chr8 (266-408)||(39093055-39093194)
chr8 (276-380)||(22209401-22209505)
chr8 (316-383)||(9460450-9460517)
chr8 (231-382)||(27055903-27056054)
chr8 (315-380)||(12782772-12782837)
chr8 (237-325)||(11995160-11995248)
chr8 (266-363)||(2445121-2445218)
chr8 (263-383)||(8108241-8108362)
chr8 (265-354)||(40949379-40949468)
chr8 (336-380)||(11993829-11993873)
chr8 (291-379)||(36924031-36924119)
chr8 (316-383)||(20279602-20279669)
chr8 (316-383)||(21066229-21066296)
chr8 (321-409)||(45368775-45368865)
chr8 (277-383)||(12002259-12002365)
chr8 (266-380)||(24103049-24103162)
chr8 (293-344)||(5217782-5217833)
chr8 (304-343)||(17521038-17521077)
chr8 (311-382)||(31264990-31265061)
chr8 (320-363)||(39333550-39333593)
chr8 (270-380)||(37167016-37167125)
chr8 (237-377)||(5293711-5293852)
chr8 (311-380)||(37564374-37564443)
chr8 (303-380)||(42760181-42760258)
chr8 (304-380)||(7528262-7528338)
[»] chr6 (6 HSPs)
chr6 (266-408)||(30509287-30509425)
chr6 (272-409)||(13070645-13070783)
chr6 (327-379)||(30250611-30250663)
chr6 (237-408)||(13070474-13070646)
chr6 (277-383)||(31702748-31702854)
chr6 (293-383)||(12383042-12383132)
[»] chr3 (31 HSPs)
chr3 (236-363)||(46711882-46712008)
chr3 (231-382)||(37708430-37708580)
chr3 (266-359)||(52309184-52309277)
chr3 (232-377)||(38457179-38457324)
chr3 (285-380)||(39400293-39400388)
chr3 (237-354)||(40546348-40546464)
chr3 (299-381)||(50217002-50217083)
chr3 (238-375)||(46188549-46188685)
chr3 (234-379)||(48322172-48322316)
chr3 (237-383)||(30082849-30082997)
chr3 (344-383)||(52309008-52309047)
chr3 (262-363)||(31901804-31901904)
chr3 (265-354)||(40392413-40392502)
chr3 (297-365)||(24658464-24658532)
chr3 (285-383)||(25461462-25461561)
chr3 (338-380)||(23642744-23642786)
chr3 (303-383)||(1511326-1511407)
chr3 (303-383)||(41571601-41571682)
chr3 (266-358)||(47115310-47115403)
chr3 (294-382)||(8703339-8703427)
chr3 (294-382)||(9055226-9055314)
chr3 (290-354)||(11404727-11404791)
chr3 (304-383)||(18399194-18399274)
chr3 (285-363)||(50368424-50368500)
chr3 (297-408)||(34758900-34759007)
chr3 (311-352)||(43803992-43804033)
chr3 (311-352)||(54290819-54290860)
chr3 (285-358)||(5504809-5504884)
chr3 (262-330)||(31681165-31681233)
chr3 (262-330)||(31917461-31917529)
chr3 (290-354)||(55110048-55110112)
[»] chr2 (33 HSPs)
chr2 (266-382)||(13811033-13811148)
chr2 (281-406)||(18223087-18223208)
chr2 (274-379)||(2825961-2826066)
chr2 (266-379)||(27133072-27133185)
chr2 (266-380)||(16717604-16717718)
chr2 (266-382)||(26408338-26408456)
chr2 (237-383)||(3882608-3882754)
chr2 (229-354)||(2888929-2889054)
chr2 (265-381)||(42924413-42924529)
chr2 (260-375)||(35312103-35312218)
chr2 (285-381)||(8964386-8964482)
chr2 (266-365)||(10824647-10824747)
chr2 (303-382)||(6761760-6761839)
chr2 (327-382)||(45076186-45076241)
chr2 (266-380)||(6797192-6797306)
chr2 (316-380)||(33275940-33276004)
chr2 (266-409)||(14102296-14102436)
chr2 (260-379)||(37617380-37617499)
chr2 (229-383)||(10204149-10204306)
chr2 (274-358)||(35477693-35477778)
chr2 (311-383)||(12075564-12075636)
chr2 (285-341)||(19495237-19495293)
chr2 (296-380)||(44941108-44941192)
chr2 (277-376)||(9153483-9153581)
chr2 (264-363)||(11001439-11001537)
chr2 (304-408)||(31513724-31513823)
chr2 (266-313)||(45303580-45303627)
chr2 (290-352)||(20128353-20128415)
chr2 (266-350)||(27948007-27948092)
chr2 (311-352)||(32859808-32859849)
chr2 (303-383)||(13538388-13538468)
chr2 (237-352)||(16944787-16944902)
chr2 (237-352)||(17015452-17015567)
[»] chr7 (19 HSPs)
chr7 (237-351)||(42890231-42890345)
chr7 (262-375)||(9533512-9533625)
chr7 (266-375)||(42911060-42911169)
chr7 (266-380)||(1360531-1360645)
chr7 (266-380)||(10031918-10032032)
chr7 (285-380)||(33887869-33887963)
chr7 (281-358)||(15995905-15995983)
chr7 (285-351)||(40065799-40065865)
chr7 (285-377)||(3256643-3256736)
chr7 (234-329)||(46127982-46128077)
chr7 (304-408)||(47507581-47507681)
chr7 (297-357)||(44719424-44719484)
chr7 (303-381)||(8920737-8920815)
chr7 (265-358)||(14574749-14574843)
chr7 (291-380)||(676395-676483)
chr7 (276-380)||(28733764-28733869)
chr7 (307-383)||(5248671-5248747)
chr7 (304-383)||(17157804-17157884)
chr7 (315-408)||(28770448-28770537)
[»] chr5 (28 HSPs)
chr5 (266-383)||(32017414-32017532)
chr5 (276-383)||(34032097-34032204)
chr5 (266-355)||(27833287-27833376)
chr5 (20-141)||(27103087-27103205)
chr5 (234-380)||(10145305-10145451)
chr5 (288-408)||(17098205-17098321)
chr5 (304-375)||(26663635-26663706)
chr5 (304-375)||(26935230-26935301)
chr5 (20-136)||(27096784-27096897)
chr5 (303-383)||(27016663-27016743)
chr5 (303-380)||(8761922-8761999)
chr5 (268-383)||(779078-779192)
chr5 (285-380)||(36160314-36160409)
chr5 (295-334)||(42338033-42338072)
chr5 (293-408)||(28793306-28793417)
chr5 (314-380)||(39382490-39382556)
chr5 (266-299)||(42337986-42338019)
chr5 (336-380)||(141867-141911)
chr5 (296-408)||(967074-967181)
chr5 (295-379)||(2816174-2816258)
chr5 (296-363)||(1354375-1354442)
chr5 (304-383)||(3263739-3263818)
chr5 (309-380)||(3758195-3758266)
chr5 (304-354)||(7210950-7211000)
chr5 (306-380)||(8247062-8247136)
chr5 (290-383)||(16161411-16161504)
chr5 (306-354)||(14042484-14042532)
chr5 (285-355)||(39099889-39099961)
[»] scaffold0009 (1 HSPs)
scaffold0009 (266-380)||(189064-189178)
[»] scaffold0291 (1 HSPs)
scaffold0291 (269-380)||(11664-11775)
[»] scaffold0111 (1 HSPs)
scaffold0111 (276-363)||(38917-39004)
[»] scaffold0011 (1 HSPs)
scaffold0011 (290-354)||(219211-219275)


Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Complemental strand, 37180048 - 37179634
Alignment:
Q  18 attccaacaattccatctctcaacattccaccattgccagcagtcacttcacttccaaaccttccttcaatcccaaccactttcccctccatcccatttt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37180048 attccaacaattccatctctcaacattccaccattgccagcagtcacttcacttccaaaccttccttcaatcccaaccactttcccctccattccatttt 37179949  T
Q  118 tctccccacaaccttcaacctctagtccttaaacatttctagatttgccaagtatcattatatttatgaggtcagctaaatgcatgcaatagacattgca 217  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37179948 tctccccaccaccttcaacctctagtccttaaacatttctagatttgccaagtatcattatatttatgaggtcagctaaatgcatgcaatagacattgca 37179849  T
Q  218 tgcattatttctttatggaaaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacat 317  Q
    ||||||||||||||||||||||||||||||||||  | ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37179848 tgcattatttctttatggaaaatgttaacgagtgtccccgagacattttttaaggactataaatagcaagtatttataaaaatacatataatcaatacat 37179749  T
Q  318 tggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcccgccccggagacactcgttaacaagatgatttctt 417  Q
    ||||||||||||||||| |||||| |||| ||||||| ||||||||||||||||||||||||| |||||| |||| ||||||||||||| || |||||||    
T  37179748 tggaaatcgaaatgtttgacttttctaaaaaataattacttgttttggtatgcttaaagagtgtccgccctggaggcactcgttaacaaaatcatttctt 37179649  T
Q  418 tattgtgtgtgatga 432  Q
    |||||||||||||||    
T  37179648 tattgtgtgtgatga 37179634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 37189806 - 37189945
Alignment:
Q  18 attccaacaattccatctctcaacattccaccattgccagcagtcacttcacttccaaaccttccttcaatcccaaccactttcccctccatcccatttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37189806 attccaacaattccatctctcaacattccaccattgccagcagtcacttcacttccaaaccttccttcaatcccaaccactttcccctccatcccatttt 37189905  T
Q  118 tctccccacaaccttcaacctctagtccttaaacatttct 157  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  37189906 tctccccaccaccttcaacctctagtccttaaacacttct 37189945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 266 - 384
Target Start/End: Original strand, 32055337 - 32055456
Alignment:
Q  266 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcg-aaatgtttaacttttttaaagaataattgcttgttttg 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||| |||||||||||||||||||||     
T  32055337 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatgcattggaaatcgaaaatgtttgacttttctaaagaataattgcttgttttt 32055436  T
Q  365 gtatgcttaaagagtgcccg 384  Q
    ||||||||||||||||||||    
T  32055437 gtatgcttaaagagtgcccg 32055456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 37181689 - 37181778
Alignment:
Q  18 attccaacaattccatctctcaacattccaccattgccagcagtcacttcacttccaaaccttccttcaatcccaaccactttcccctcc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37181689 attccaacaattccatctctcaacattccaccattgccagcagtcacttcacttccaaaccttccttcaatcccaaccactttcccctcc 37181778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 37187730 - 37187642
Alignment:
Q  19 ttccaacaattccatctctcaacattccaccattgccagcagtcacttcacttccaaaccttccttcaatcccaaccactttcccctcc 107  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||    
T  37187730 ttccaacaattccatctctcaacattccaccattgccagcagccacttcacttcccaacattccttcaatcccaaccactttcccctcc 37187642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 266 - 381
Target Start/End: Original strand, 39827145 - 39827261
Alignment:
Q  266 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataa-ttgcttgttttg 364  Q
    |||||||||||||||||| |||||||||||||| |||| |||||||||  |||| |||| ||||| ||| || |||||||||||||| ||||||||||||    
T  39827145 tttaaggactataaatagtaagtatttataaaattacaagtaatcaatgaattgaaaattgaaatttttgacatttttaaagaataatttgcttgttttg 39827244  T
Q  365 gtatgcttaaagagtgc 381  Q
     ||||||||||||||||    
T  39827245 atatgcttaaagagtgc 39827261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 274 - 383
Target Start/End: Original strand, 42370318 - 42370427
Alignment:
Q  274 ctataaatagcaagtatttataaaaa-tacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgctt 372  Q
    |||||||||||||||||||||||||| | |||||||| ||| ||||| ||||  |||| ||| |||||| ||||||||||||||||||||||||||||||    
T  42370318 ctataaatagcaagtatttataaaaaatgcatgtaattaatgcattgaaaattaaaatattttactttt-taaagaataattgcttgttttggtatgctt 42370416  T
Q  373 aaagagtgccc 383  Q
    |||||||||||    
T  42370417 aaagagtgccc 42370427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 230 - 383
Target Start/End: Original strand, 44690222 - 44690377
Alignment:
Q  230 ttatggaaaatgttaacgagtgctctcgatacatt-ttttaaggactataaatagcaa-gtatttataaaaatacatgtaatcaatacattggaaatcga 327  Q
    |||||| |||||||||||||||  ||||  ||| | |||||||||| |||| | |||| |||||||| |||||| ||||||| | ||||||| |||||||    
T  44690222 ttatgggaaatgttaacgagtgtcctcgggacactcttttaaggaccataagtggcaaagtatttatgaaaatatatgtaattattacattgaaaatcga 44690321  T
Q  328 aatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 383  Q
    ||| |||||||||||||||  |||||| ||| |||| ||||| |||||||||||||    
T  44690322 aatatttaacttttttaaaagataattacttattttagtatgtttaaagagtgccc 44690377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 267 - 381
Target Start/End: Complemental strand, 24369516 - 24369401
Alignment:
Q  267 ttaaggactataaatagcaagtatttataaaaa-tacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 365  Q
    ||||||||||||  ||| || |||||||||||| ||||| |||||| | | |||||||| ||||||||| |||||| ||||||||||||| || |||| |    
T  24369516 ttaaggactatatgtagaaaatatttataaaaaatacatataatcagtgctttggaaattgaaatgtttgacttttataaagaataattgtttattttag 24369417  T
Q  366 tatgcttaaagagtgc 381  Q
    |||| |||||||||||    
T  24369416 tatgtttaaagagtgc 24369401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 264 - 379
Target Start/End: Original strand, 50343831 - 50343946
Alignment:
Q  264 tttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 363  Q
    |||||||||||  ||| ||| ||| |||||| ||||||||| |||||||||||||| ||||  |||| ||| ||||||||||||||||||| ||| ||||    
T  50343831 tttttaaggaccgtaagtagtaagaatttatgaaaatacatataatcaatacattgaaaattaaaatatttgacttttttaaagaataattacttatttt 50343930  T
Q  364 ggtatgcttaaagagt 379  Q
       |||||||||||||    
T  50343931 aaaatgcttaaagagt 50343946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 288 - 376
Target Start/End: Original strand, 44670849 - 44670937
Alignment:
Q  288 tatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaag 376  Q
    |||||||||||||| ||||||| | | |||||||||||||||| ||||| |||||||||  ||||||  ||||||| ||||||||||||    
T  44670849 tatttataaaaatatatgtaattattgcattggaaatcgaaatatttaatttttttaaaagataattatttgttttagtatgcttaaag 44670937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 304 - 383
Target Start/End: Original strand, 53737829 - 53737908
Alignment:
Q  304 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 383  Q
    |||| ||||| |||||||||||||||| ||| | ||||||||||||||||| ||| |||||| | |||||||||||||||    
T  53737829 tgtattcaatgcattggaaatcgaaatatttgaattttttaaagaataatttcttattttggaacgcttaaagagtgccc 53737908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 237 - 408
Target Start/End: Original strand, 41370136 - 41370303
Alignment:
Q  237 aaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaa 336  Q
    |||||||||| ||| |||||||  || |||||||||||| | ||||| |||| ||||| |||||   |||||||||| ||||| |||| ||||| |||||    
T  41370136 aaatgttaacaagttctctcgaggcactttttaaggactttgaatagtaagtttttatgaaaatttgtgtaatcaatgcattgaaaattgaaatatttaa 41370235  T
Q  337 cttttttaaagaataattgcttgttttggtatgcttaaagagtgcccgccccggagacactcgttaacaaga 408  Q
    ||||||| |  ||||||| |||  |||||  ||||||| ||||    || ||||| ||||||||||||||||    
T  41370236 cttttttgagaaataatttcttaatttggattgcttaatgagt----gctccggaaacactcgttaacaaga 41370303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 237 - 379
Target Start/End: Original strand, 50086376 - 50086518
Alignment:
Q  237 aaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaa 336  Q
    |||||||||||||||||| ||   || | |||||| ||||||| | | ||| |||||| ||||||  |||| ||||| ||||| ||||| |||| ||| |    
T  50086376 aaatgttaacgagtgctcccggggcactctttaagaactataagtggtaagcatttatgaaaatatgtgtattcaatgcattgaaaatcaaaatatttga 50086475  T
Q  337 cttttttaaagaataattgcttgttttggtatgcttaaagagt 379  Q
     |||||||||||||||||| || |||||| ||| |||||||||    
T  50086476 tttttttaaagaataattgtttattttggaatgtttaaagagt 50086518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 285 - 383
Target Start/End: Original strand, 23016238 - 23016336
Alignment:
Q  285 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 383  Q
    |||| ||||||||| |  ||||| ||||| |||||||||| ||||||||| |||| |||||| ||||||| |||  ||||| ||||| |||||||||||    
T  23016238 aagtttttataaaagtctatgtattcaatgcattggaaattgaaatgtttgacttctttaaataataatttcttaatttggaatgctcaaagagtgccc 23016336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 293 - 379
Target Start/End: Complemental strand, 41468166 - 41468080
Alignment:
Q  293 ataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagt 379  Q
    ||||||||||||||||||||| |||  ||||||| ||| ||||||||||||| |  |||||| ||| |||||| || ||||||||||    
T  41468166 ataaaaatacatgtaatcaatgcatcagaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagt 41468080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 375
Target Start/End: Original strand, 10095637 - 10095746
Alignment:
Q  266 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 365  Q
    ||||||||  |||| ||| || ||||||||||||| |||||||||| | ||||| |||||||||| ||| | |||||||||  ||||||| || |||| |    
T  10095637 tttaaggatcataagtagaaaatatttataaaaatgcatgtaatcattgcattgaaaatcgaaatatttgatttttttaaaagataattgtttattttag 10095736  T
Q  366 tatgcttaaa 375  Q
    |||| |||||    
T  10095737 tatgtttaaa 10095746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 380
Target Start/End: Complemental strand, 47560763 - 47560621
Alignment:
Q  237 aaatgttaacgagtgctctc-gatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgttta 335  Q
    |||||||||||||||| ||| || ||| | ||||||||| |||||||| ||||||| || ||||| | ||||||||||  |||  ||||| |||  |||     
T  47560763 aaatgttaacgagtgc-ctctgagacactctttaaggaccataaatagtaagtattaatgaaaatgcgtgtaatcaatgtattaaaaatcaaaacatttg 47560665  T
Q  336 acttttttaaagaataattgcttgttttggtatgcttaaagagtg 380  Q
    | ||||||||| ||||||||||| |||||| ||| ||||||||||    
T  47560664 atttttttaaa-aataattgcttattttggaatgattaaagagtg 47560621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 380
Target Start/End: Complemental strand, 50775048 - 50774956
Alignment:
Q  288 tatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 380  Q
    ||||||| ||||||  |||||||||||  ||| ||||| |||| ||||||||||||||||||||||| ||| |||| | || |||||| ||||    
T  50775048 tatttatgaaaatatgtgtaatcaatatgttgaaaatcaaaatatttaacttttttaaagaataattacttattttagaatacttaaaaagtg 50774956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 379
Target Start/End: Original strand, 28005238 - 28005353
Alignment:
Q  264 tttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 363  Q
    |||||||| | ||||| ||| |||||||||| ||||||||| | || |  | ||| |||||| |||| ||| |||||||||||  |||||||||| ||||    
T  28005238 tttttaagaattataagtagtaagtatttatgaaaatacatattattataaaattagaaatcaaaatatttgacttttttaaaagataattgcttatttt 28005337  T
Q  364 ggtatgcttaaagagt 379  Q
     ||||| |||||||||    
T  28005338 agtatgtttaaagagt 28005353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 354
Target Start/End: Original strand, 24324196 - 24324313
Alignment:
Q  237 aaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaa 336  Q
    ||||||||| |||| || || ||| |||  |||| ||||||||| || ||||||||||||||||  |||||||| || ||||| ||||  |||| ||| |    
T  24324196 aaatgttaatgagtactttcaatatattcgttaaagactataaagagtaagtatttataaaaatgtatgtaatctatgcattgaaaattaaaatatttta 24324295  T
Q  337 cttttttaaagaataatt 354  Q
     ||||||| |||||||||    
T  24324296 tttttttagagaataatt 24324313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 276 - 380
Target Start/End: Original strand, 54700851 - 54700953
Alignment:
Q  276 ataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaa 375  Q
    |||| ||| |||||||| ||||||| |||||||||| | | ||||||||| |||| ||| |||||||  |||||||||| ||| ||||   |||||||||    
T  54700851 ataagtagtaagtatttttaaaaatgcatgtaatcattgccttggaaatcaaaatatttgacttttt--aagaataattacttattttaaaatgcttaaa 54700948  T
Q  376 gagtg 380  Q
    |||||    
T  54700949 gagtg 54700953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 383
Target Start/End: Complemental strand, 53919936 - 53919860
Alignment:
Q  307 aatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 383  Q
    ||||||| ||| |||||| ||||| ||| ||||||||| |||||||||  || |||||  |||||||||||||||||    
T  53919936 aatcaatgcatcggaaattgaaatttttgacttttttatagaataatttattcttttgaaatgcttaaagagtgccc 53919860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 16822280 - 16822358
Alignment:
Q  285 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 363  Q
    |||||||||| ||||| ||||||| |||||  |||||||| ||||| ||| | ||||| ||| ||||||||||| ||||    
T  16822280 aagtatttatgaaaatgcatgtaaacaatatcttggaaattgaaatatttgattttttaaaaaaataattgcttatttt 16822358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 33982504 - 33982446
Alignment:
Q  296 aaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataatt 354  Q
    |||||| |||||||||||  || |||||||||||| ||||||||||||| | |||||||    
T  33982504 aaaatatatgtaatcaatgtatcggaaatcgaaatatttaacttttttataaaataatt 33982446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 363
Target Start/End: Complemental strand, 49144845 - 49144775
Alignment:
Q  293 ataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 363  Q
    ||||||||| ||||||||||| ||| | ||||| |||| ||||||||||||| | ||||||| ||| ||||    
T  49144845 ataaaaatatatgtaatcaatgcatcgaaaatcaaaatttttaacttttttataaaataatttcttctttt 49144775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 352
Target Start/End: Complemental strand, 2063539 - 2063498
Alignment:
Q  311 aatacattggaaatcgaaatgtttaacttttttaaagaataa 352  Q
    |||||||||||||| ||| ||||| |||||||||||||||||    
T  2063539 aatacattggaaattgaactgtttgacttttttaaagaataa 2063498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 380
Target Start/End: Complemental strand, 53261666 - 53261553
Alignment:
Q  267 ttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggt 366  Q
    ||||||||| ||||||| || | ||||||||| |   |||||||| | |||||||||| ||||  ||| |  |||||||||||||||| |||  ||| |     
T  53261666 ttaaggactttaaatagtaactttttataaaagtttgtgtaatcactgcattggaaattgaaaacttttaaatttttaaagaataattacttaatttagc 53261567  T
Q  367 atgcttaaagagtg 380  Q
    ||||||||||||||    
T  53261566 atgcttaaagagtg 53261553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 383
Target Start/End: Original strand, 31871089 - 31871169
Alignment:
Q  303 atgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 383  Q
    ||||||||||| ||| |||||| ||||| ||| ||||||||| | ||||||| ||| |||||  ||||||| | |||||||    
T  31871089 atgtaatcaatgcatcggaaattgaaatattttacttttttataaaataatttcttcttttgaaatgcttagaaagtgccc 31871169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 380
Target Start/End: Original strand, 41956465 - 41956541
Alignment:
Q  304 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 380  Q
    |||||||||| | ||| |||| ||||| ||||| ||| |||||||||| || ||| ||||||  |||||||||||||    
T  41956465 tgtaatcaatgcgttgaaaattgaaatatttaaatttcttaaagaatactttcttattttggattgcttaaagagtg 41956541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 380
Target Start/End: Original strand, 42956987 - 42957083
Alignment:
Q  285 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaactttttt-aaagaataattgcttgttttggtatgcttaaagagtg 380  Q
    ||||||||||||||||   |||||| ||| |||||||||| ||||| ||| | |||||| ||| ||||| ||||| |||| | ||| ||||||||||    
T  42956987 aagtatttataaaaatgtgtgtaattaatgcattggaaattgaaatatttgatttttttaaaataataactgcttattttagaatgtttaaagagtg 42957083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 383
Target Start/End: Original strand, 49446628 - 49446708
Alignment:
Q  304 tgtaatcaatacattggaaatcgaaatgtttaac-ttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 383  Q
    |||||||||| ||| |||||||||||| ||| || ||||||| | ||||| | ||| |||||| || ||||||||||||||    
T  49446628 tgtaatcaatgcatcggaaatcgaaatatttgactttttttataaaataacttcttcttttggaatccttaaagagtgccc 49446708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 50115118 - 50115058
Alignment:
Q  304 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttg 364  Q
    |||||||||| ||| |||||||||||| ||| ||||||||| | ||||||| ||| |||||    
T  50115118 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcttcttttg 50115058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 7e-53; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 266 - 383
Target Start/End: Original strand, 36321622 - 36321739
Alignment:
Q  266 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  36321622 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatgcattggaaatcgaaatgtttaacttttctaaagaataattacttgttttgg 36321721  T
Q  366 tatgcttaaagagtgccc 383  Q
    ||||||||||||||||||    
T  36321722 tatgcttaaagagtgccc 36321739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 266 - 384
Target Start/End: Original strand, 4521005 - 4521123
Alignment:
Q  266 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 365  Q
    |||||||||||||  ||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||| |    
T  4521005 tttaaggactatatgtagaaagtatttataaaaatacatgtaatcaatgcattggaaattgaaatgtttaacttttttaaagaataatcgcttgttttag 4521104  T
Q  366 tatgcttaaagagtgcccg 384  Q
    |||||||||||||||||||    
T  4521105 tatgcttaaagagtgcccg 4521123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 276 - 406
Target Start/End: Complemental strand, 4772121 - 4771995
Alignment:
Q  276 ataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaa 375  Q
    |||| ||||||||||||||||||||   |||||| ||||||||| |||||||||| ||  ||||||| ||| |||||||||||  |||||||||||||||    
T  4772121 ataagtagcaagtatttataaaaatgtgtgtaattaatacattgaaaatcgaaatattctactttttaaaaaaataattgcttcatttggtatgcttaaa 4772022  T
Q  376 gagtgcccgccccggagacactcgttaacaa 406  Q
    ||||    ||||||||| |||||||||||||    
T  4772021 gagt----gccccggaggcactcgttaacaa 4771995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 285 - 380
Target Start/End: Complemental strand, 46370924 - 46370828
Alignment:
Q  285 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaactttttt-aaagaataattgcttgttttggtatgcttaaagagtg 380  Q
    ||||||||| |||||||  |||||||||  ||||| |||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||    
T  46370924 aagtatttaaaaaaatatgtgtaatcaacgcattgaaaatcgaaatgtttaaatttttttaaagaataattgcttgttttgatatgcttaaagagtg 46370828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 266 - 381
Target Start/End: Original strand, 33744132 - 33744247
Alignment:
Q  266 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 365  Q
    ||||| |||||||| ||| |||||||||| |||| | ||||||||||| ||||| |||||||||| ||| ||||||| ||| ||||||| ||| ||||      
T  33744132 tttaacgactataagtagaaagtatttatgaaaaaatatgtaatcaatgcattgaaaatcgaaatatttgactttttaaaaaaataattacttattttaa 33744231  T
Q  366 tatgcttaaagagtgc 381  Q
     |||||||||||||||    
T  33744232 aatgcttaaagagtgc 33744247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 285 - 380
Target Start/End: Complemental strand, 36622023 - 36621928
Alignment:
Q  285 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 380  Q
    |||||||| ||||||| |||||||||| |   ||||||||| |||| ||||||||||||||||||||||||||| |||||  ||| ||||||||||    
T  36622023 aagtatttttaaaaatgcatgtaatcattgttttggaaatcaaaatatttaacttttttaaagaataattgcttattttgaaatgtttaaagagtg 36621928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 293 - 383
Target Start/End: Original strand, 4039626 - 4039716
Alignment:
Q  293 ataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 383  Q
    ||||||||| ||||||||||| |||||||||||||||| ||| ||||||||| | |||||||  || |||||| || ||||||||||||||    
T  4039626 ataaaaatatatgtaatcaatgcattggaaatcgaaatatttgacttttttataaaataatttattcttttggaatccttaaagagtgccc 4039716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 281 - 380
Target Start/End: Complemental strand, 48812027 - 48811928
Alignment:
Q  281 tagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 380  Q
    |||||||||||||||||||| | |||||||||| ||||||| || ||||| ||| ||||||| ||||||||||| ||| ||||   | ||||||||||||    
T  48812027 tagcaagtatttataaaaatgcgtgtaatcaatgcattggagattgaaatattttactttttaaaagaataattacttattttaacaggcttaaagagtg 48811928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 342
Target Start/End: Complemental strand, 15549745 - 15549640
Alignment:
Q  237 aaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaa 336  Q
    ||||||||||||||||  |||   || | ||||| |||||||| ||||||||||||||||||||   |||||||||| ||||| |||||||||| ||| |    
T  15549745 aaatgttaacgagtgccatcggaccactctttaaagactataagtagcaagtatttataaaaatgtgtgtaatcaatgcattgaaaatcgaaatatttta 15549646  T
Q  337 cttttt 342  Q
    ||||||    
T  15549645 cttttt 15549640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 383
Target Start/End: Complemental strand, 40570774 - 40570681
Alignment:
Q  291 ttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtat-gcttaaagagtgccc 383  Q
    |||| ||||| ||||||||||||   | |||||||||||||||| ||||||||||||||||||||||  |||| | || |||||||||||||||    
T  40570774 ttatgaaaatgcatgtaatcaatgtctaggaaatcgaaatgtttgacttttttaaagaataattgctaatttttggatagcttaaagagtgccc 40570681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 375
Target Start/End: Original strand, 7481409 - 7481481
Alignment:
Q  304 tgtaatcaatacattggaaatcgaaatgtttaac-ttttttaaagaataattgcttgttttggtatgcttaaa 375  Q
    |||||||||||||||| |||||||| | |||||| ||||||||||||||||||||| |||| | |||||||||    
T  7481409 tgtaatcaatacattgaaaatcgaagtatttaactttttttaaagaataattgcttattttagcatgcttaaa 7481481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 237 - 381
Target Start/End: Complemental strand, 17554996 - 17554852
Alignment:
Q  237 aaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaa 336  Q
    ||||||||||||||||||||     ||| ||||||||| |||| ||  || ||||||| |||| | || |||||||| ||||| |||| ||||  |||||    
T  17554996 aaatgttaacgagtgctctccgcgtattctttaaggaccataagtaataactatttatgaaaaaatatataatcaatgcattgtaaattgaaacatttaa 17554897  T
Q  337 cttttttaaagaataattgcttgttttggtatgcttaaagagtgc 381  Q
    |||||||||| |||||||| || |||||  ||| |||||||||||    
T  17554896 cttttttaaaaaataattgtttattttgaaatgtttaaagagtgc 17554852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 382
Target Start/End: Complemental strand, 17112793 - 17112696
Alignment:
Q  288 tatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaag---aataattgcttgttttggtatgcttaaagagtgcc 382  Q
    ||||||| |||||| ||||||||||| ||||||||||| |||| ||| |||||||| |||   ||||||| ||| |||||  ||||||||||||||||    
T  17112793 tatttatgaaaatatatgtaatcaatgcattggaaatcaaaatatttgacttttttgaagaataataattacttattttgccatgcttaaagagtgcc 17112696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 261 - 380
Target Start/End: Complemental strand, 37976941 - 37976823
Alignment:
Q  261 cattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgt 360  Q
    ||||||||||||||||||||| |  | |||||||||||||||  ||| |||| |||||| ||||| |||| ||| || ||||||||| ||||||  || |    
T  37976941 cattttttaaggactataaatggttaatatttataaaaatacgcgtattcaaaacattgaaaatcaaaatatttgac-tttttaaagtataattttttat 37976843  T
Q  361 tttggtatgcttaaagagtg 380  Q
    ||| | ||||||||||||||    
T  37976842 tttagaatgcttaaagagtg 37976823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 266 - 363
Target Start/End: Original strand, 26322612 - 26322710
Alignment:
Q  266 tttaaggactataaatagcaagtat-ttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 363  Q
    ||||||||  |||| ||| |||||| |||| ||||| ||||||||||||   |||||||||||||||||| | |||||| |||||||||||||| ||||    
T  26322612 tttaaggatcataattagtaagtatattatgaaaatgcatgtaatcaatgtcttggaaatcgaaatgtttgattttttttaagaataattgcttatttt 26322710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 306 - 409
Target Start/End: Complemental strand, 39973961 - 39973862
Alignment:
Q  306 taatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcccgccccggagacactcgttaaca 405  Q
    |||||||| ||||| |||| ||||  |||||| |||| ||||||||||| |||  ||| | |||||||||||||    ||||||||||||||||||||||    
T  39973961 taatcaatgcattgaaaattgaaaactttaacattttaaaagaataattacttaatttagcatgcttaaagagt----gccccggagacactcgttaaca 39973866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 379
Target Start/End: Complemental strand, 2633100 - 2633027
Alignment:
Q  306 taatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagt 379  Q
    ||||||||| ||||||||||||||  ||||||||||||||| ||| ||||||| |||| | ||| |||||||||    
T  2633100 taatcaatatattggaaatcgaaacatttaacttttttaaaaaattattgcttattttagaatgtttaaagagt 2633027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 380
Target Start/End: Original strand, 8836490 - 8836602
Alignment:
Q  266 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 365  Q
    |||||| ||||||| | | |||||||||||||||| || ||| | ||| || |  |||||||||| ||| |||||||||||||||||||| || ||| |     
T  8836490 tttaagaactataagtggtaagtatttataaaaatgcaagtatttaatgcact--aaatcgaaatatttgacttttttaaagaataattgtttatttcga 8836587  T
Q  366 tatgcttaaagagtg 380  Q
     ||||||||||||||    
T  8836588 aatgcttaaagagtg 8836602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 306 - 381
Target Start/End: Complemental strand, 34445738 - 34445663
Alignment:
Q  306 taatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgc 381  Q
    |||||||| |||||||||||||||| ||| ||||||||| | | ||||| ||| |||||| || ||||||||||||    
T  34445738 taatcaatgcattggaaatcgaaatatttgacttttttataaattaatttcttcttttggaatccttaaagagtgc 34445663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 383
Target Start/End: Complemental strand, 45584610 - 45584531
Alignment:
Q  304 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 383  Q
    ||||||||||||||  |||||  |||| ||||||||||||| | ||||||| ||| |||||| || ||||||||||||||    
T  45584610 tgtaatcaatacatcagaaattaaaatatttaacttttttataaaataatttcttcttttggaatccttaaagagtgccc 45584531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 355
Target Start/End: Original strand, 50670365 - 50670482
Alignment:
Q  237 aaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgttt-a 335  Q
    |||||||||||||||||| ||| ||| | || ||||| ||||||||| |||||||||| ||||| ||||||||  || ||||||||| | |||| ||| |    
T  50670365 aaatgttaacgagtgctc-cga-acactcttcaaggattataaatagtaagtatttatgaaaatgcatgtaatagatgcattggaaaacaaaatatttga 50670462  T
Q  336 acttttttaaagaataattg 355  Q
      ||||||||||||||||||    
T  50670463 ttttttttaaagaataattg 50670482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 355
Target Start/End: Original strand, 9221239 - 9221309
Alignment:
Q  285 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattg 355  Q
    |||||||||| ||||||  |||| | | | |||||||||||||||| |||||||||| |||||||||||||    
T  9221239 aagtatttatgaaaatatgtgtattaattgcattggaaatcgaaatatttaacttttctaaagaataattg 9221309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 382
Target Start/End: Original strand, 40203113 - 40203191
Alignment:
Q  304 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcc 382  Q
    |||||||||| |||||||||| ||||| ||| |||||||||   ||||||| |||||||||  || |||||||||||||    
T  40203113 tgtaatcaatgcattggaaattgaaatatttgacttttttatgaaataatttcttgttttgtaatccttaaagagtgcc 40203191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 383
Target Start/End: Complemental strand, 3047936 - 3047859
Alignment:
Q  306 taatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 383  Q
    |||||||| |||||||||||||||  ||| || ||||||||||| |||| |||  ||| | |||||||||||||||||    
T  3047936 taatcaatgcattggaaatcgaaaaatttgacatttttaaagaacaattacttaatttagcatgcttaaagagtgccc 3047859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 381
Target Start/End: Complemental strand, 37705980 - 37705871
Alignment:
Q  272 gactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgct 371  Q
    |||||||| |||||||||||||| |||| || |||||| ||| ||||| ||||| |||  ||| | |||| |||| ||||||| ||  |||| | |||||    
T  37705980 gactataagtagcaagtatttatgaaaaaacgtgtaattaatgcattgaaaatcaaaacatttgagttttctaaaaaataattactcattttcgaatgct 37705881  T
Q  372 taaagagtgc 381  Q
    ||||||||||    
T  37705880 taaagagtgc 37705871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 383
Target Start/End: Original strand, 34861259 - 34861326
Alignment:
Q  316 attggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 383  Q
    ||||||||| ||||||||| || |||||||| ||||||| |||  ||| | |||||||||||||||||    
T  34861259 attggaaattgaaatgtttgacatttttaaaaaataattacttaatttagaatgcttaaagagtgccc 34861326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 374
Target Start/End: Original strand, 28672303 - 28672393
Alignment:
Q  285 aagtatttataaaaa-tacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaa 374  Q
    ||||||||||||||| ||  |||||||||| ||||  ||||| |||| ||| ||||||||||| |||||||| || |||| | ||||||||    
T  28672303 aagtatttataaaaaatatgtgtaatcaatgcatttaaaatcaaaatatttgacttttttaaaaaataattgtttattttagaatgcttaa 28672393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 379
Target Start/End: Original strand, 64863 - 64936
Alignment:
Q  306 taatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagt 379  Q
    |||||||| || || || ||||||| |||||| ||||||||||||||||| || |||| | ||| |||||||||    
T  64863 taatcaatgcaatgaaattcgaaatatttaacgtttttaaagaataattgtttattttagaatgtttaaagagt 64936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 382
Target Start/End: Original strand, 3755944 - 3756041
Alignment:
Q  285 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcc 382  Q
    ||||||||||||||||  ||||||||||   |||| ||||  ||||| || ||| ||||||||||||||| ||| |||| | ||| ||||||| ||||    
T  3755944 aagtatttataaaaatgtatgtaatcaacgaattgcaaattaaaatgattgactcttttaaagaataatttcttattttagaatgtttaaagaatgcc 3756041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 35438069 - 35438102
Alignment:
Q  309 tcaatacattggaaatcgaaatgtttaacttttt 342  Q
    ||||| ||||||||||||||||||||||||||||    
T  35438069 tcaatgcattggaaatcgaaatgtttaacttttt 35438102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 379
Target Start/End: Original strand, 46830129 - 46830242
Alignment:
Q  266 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 365  Q
    ||||| |||||||| ||| |||||||||| |||| || |||||||||| |  || ||||  |||  |||||||||||| || |||||||| || ||||      
T  46830129 tttaaagactataagtagtaagtatttatgaaaaaacgtgtaatcaatgcggtgaaaattaaaacatttaactttttttaaaaataattgtttattttat 46830228  T
Q  366 tatgcttaaagagt 379  Q
     |||||||||||||    
T  46830229 aatgcttaaagagt 46830242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 383
Target Start/End: Original strand, 1048739 - 1048783
Alignment:
Q  339 tttttaaagaataattgcttgttttggtatgcttaaagagtgccc 383  Q
    ||||||||||||||||  ||  |||||||||||||||||||||||    
T  1048739 tttttaaagaataattttttaatttggtatgcttaaagagtgccc 1048783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 380
Target Start/End: Complemental strand, 25302143 - 25302067
Alignment:
Q  304 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 380  Q
    ||||||||||  |||| |||||||||| ||| ||||||||| | ||| |||  ||||||||| || |||||||||||    
T  25302143 tgtaatcaatgtattgaaaatcgaaatctttgacttttttatacaattattttttgttttggaatccttaaagagtg 25302067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 383
Target Start/End: Complemental strand, 48947312 - 48947196
Alignment:
Q  267 ttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggt 366  Q
    ||||||||| ||||| | || | ||||| |||||   |||||||| | |||||||||| ||||  ||| || |||||||| ||||||| |||  ||| ||    
T  48947312 ttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattgaaaactttgacatttttaaaaaataattacttaatttagt 48947213  T
Q  367 atgcttaaagagtgccc 383  Q
    ||||||||||| |||||    
T  48947212 atgcttaaagaatgccc 48947196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 264 - 408
Target Start/End: Original strand, 7513290 - 7513430
Alignment:
Q  264 tttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||| |||||||||||||||||||||    
T  7513290 tttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatgcattgaaaatcgaaatgtttaatttttctaaagaataattgcttgtttt 7513389  T
Q  364 ggtatgcttaaagagtgcccgccccggagacactcgttaacaaga 408  Q
    | ||||||||||||||||||    |||  ||||||||||||||||    
T  7513390 gatatgcttaaagagtgccc----cgggaacactcgttaacaaga 7513430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 275 - 408
Target Start/End: Original strand, 36348494 - 36348624
Alignment:
Q  275 tataaatagcaagtatttataaaaa-tacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgctta 373  Q
    ||||| || |||||||||||| ||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||| || ||||||    
T  36348494 tataagtaacaagtatttatataaagtacatgtaatcaatgcattgaaaatcaaaatgtttaacttttttaaagaataattgcttattttagtgtgctta 36348593  T
Q  374 aagagtgcccgccccggagacactcgttaacaaga 408  Q
    || |||    |||||||||||| ||||||||||||    
T  36348594 aaaagt----gccccggagacattcgttaacaaga 36348624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 267 - 381
Target Start/End: Complemental strand, 11078027 - 11077913
Alignment:
Q  267 ttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggt 366  Q
    ||||||||||||| |||||| ||||| |||||||| || |||| |||  || ||||||||||| |||| | |||||||||||||||||||||||||||||    
T  11078027 ttaaggactataagtagcaactatttttaaaaatatatataattaatgtataggaaatcgaaaagtttgaattttttaaagaataattgcttgttttggt 11077928  T
Q  367 atgcttaaagagtgc 381  Q
    |||| ||||||||||    
T  11077927 atgcataaagagtgc 11077913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 266 - 408
Target Start/End: Complemental strand, 39093194 - 39093055
Alignment:
Q  266 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgt-tttg 364  Q
    |||||||  ||||| |||||  ||||||||||||| | |||||||||| |||||||| ||||||| ||  ||||||||||||||||||||||| | ||||    
T  39093194 tttaagggatataagtagcacatatttataaaaatgcgtgtaatcaatgcattggaactcgaaatattatacttttttaaagaataattgcttttgtttg 39093095  T
Q  365 gtatgcttaaagagtgcccgccccggagacactcgttaacaaga 408  Q
    |||||||||||||||     |||||| |||||||||||||||||    
T  39093094 gtatgcttaaagagt----accccggggacactcgttaacaaga 39093055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 276 - 380
Target Start/End: Complemental strand, 22209505 - 22209401
Alignment:
Q  276 ataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaa 375  Q
    |||||||| |||||||||| |||||| |||||||||||   ||||||||| |||| |||||||||||||| |||||||||||| ||||   |||||||||    
T  22209505 ataaatagtaagtatttatgaaaatatatgtaatcaatgtcttggaaatcaaaatatttaacttttttaaggaataattgcttcttttaaaatgcttaaa 22209406  T
Q  376 gagtg 380  Q
    |||||    
T  22209405 gagtg 22209401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 316 - 383
Target Start/End: Complemental strand, 9460517 - 9460450
Alignment:
Q  316 attggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 383  Q
    |||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||    
T  9460517 attgaaaatcgaaatgtttgacttttctaaagaataattgcttgttttggtatgcttaacgagtgccc 9460450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 231 - 382
Target Start/End: Complemental strand, 27056054 - 27055903
Alignment:
Q  231 tatggaaaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaat 330  Q
    ||||| |||||||||||||||||| |||   | | |||||||||||||| ||| || ||||||| |||| |  ||||||||||||||||||||||||||     
T  27056054 tatgggaaatgttaacgagtgctcccgaagtactctttaaggactataagtagtaattatttatgaaaaaatgtgtaatcaatacattggaaatcgaaac 27055955  T
Q  331 gtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcc 382  Q
     ||||||||| ||    ||||||| ||| ||||   ||||||||||||||||    
T  27055954 atttaactttcttttgaaataatttcttattttaaaatgcttaaagagtgcc 27055903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 315 - 380
Target Start/End: Complemental strand, 12782837 - 12782772
Alignment:
Q  315 cattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 380  Q
    |||||||||||||||| || |||||||||||||||||||||| | |||| ||||||||||||||||    
T  12782837 cattggaaatcgaaatattcaacttttttaaagaataattgcatattttagtatgcttaaagagtg 12782772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 237 - 325
Target Start/End: Complemental strand, 11995248 - 11995160
Alignment:
Q  237 aaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatc 325  Q
    |||||||||||||||| | ||   || | ||||||| |||||||||||||||||||||||||||||  ||||||||| |||||||||||    
T  11995248 aaatgttaacgagtgcccccggggcactctttaaggcctataaatagcaagtatttataaaaatacgagtaatcaatgcattggaaatc 11995160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 266 - 363
Target Start/End: Original strand, 2445121 - 2445218
Alignment:
Q  266 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 363  Q
    |||||||| ||||| ||| ||||||||||||||||||||||||  | | | ||| |||||||||| ||||||||||  ||| ||||||||||| ||||    
T  2445121 tttaaggattataagtagtaagtatttataaaaatacatgtaacgattgccttgaaaatcgaaatatttaacttttaaaaaaaataattgcttatttt 2445218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 263 - 383
Target Start/End: Original strand, 8108241 - 8108362
Alignment:
Q  263 ttttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataa-ttgcttgtt 361  Q
    ||||||||||| ||||| ||| |||||||||| |||||   ||||||||||| ||   ||||| |||| |||||||||||||| |||||| ||| || ||    
T  8108241 ttttttaaggattataagtagaaagtatttatgaaaatgtgtgtaatcaatatatccaaaatcaaaatatttaacttttttaatgaataacttgtttatt 8108340  T
Q  362 ttggtatgcttaaagagtgccc 383  Q
    || | |||||||||||||||||    
T  8108341 ttagaatgcttaaagagtgccc 8108362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 354
Target Start/End: Complemental strand, 40949468 - 40949379
Alignment:
Q  265 ttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataatt 354  Q
    ||||||||||  ||| ||| |||||||||||||||| |||||||| |||| ||||||||||||||| ||  |||||| | ||||||||||    
T  40949468 ttttaaggaccttaagtagtaagtatttataaaaatgcatgtaattaatatattggaaatcgaaatattagacttttatgaagaataatt 40949379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 336 - 380
Target Start/End: Complemental strand, 11993873 - 11993829
Alignment:
Q  336 acttttttaaagaataattgcttgttttggtatgcttaaagagtg 380  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  11993873 acttttttaaagaataattgcttgtttttgtatgcttaaagagtg 11993829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 379
Target Start/End: Complemental strand, 36924119 - 36924031
Alignment:
Q  291 ttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagt 379  Q
    |||| ||||| |||||||| |||   |||||||||||||| ||| ||||||||||||||||||| |||||||| |   |||||||||||    
T  36924119 ttatgaaaatgcatgtaattaatgttttggaaatcgaaatatttgacttttttaaagaataatttcttgtttttgatagcttaaagagt 36924031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 383
Target Start/End: Original strand, 20279602 - 20279669
Alignment:
Q  316 attggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 383  Q
    |||| |||| ||||| ||| ||||||| ||||||||||||||| |||| | |||||||||||||||||    
T  20279602 attgaaaattgaaatatttgactttttgaaagaataattgcttattttagaatgcttaaagagtgccc 20279669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 383
Target Start/End: Original strand, 21066229 - 21066296
Alignment:
Q  316 attggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 383  Q
    |||| |||| ||||| ||| ||||||| ||||||||||||||| |||| | |||||||||||||||||    
T  21066229 attgaaaattgaaatatttgactttttgaaagaataattgcttattttagaatgcttaaagagtgccc 21066296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 321 - 409
Target Start/End: Original strand, 45368775 - 45368865
Alignment:
Q  321 aaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg--cccgccccggagacactcgttaacaagat 409  Q
    |||| ||||| ||||||||||||| | ||||||| ||| |||||| || |||||||||||  |||||||||| | |||||||||| |||||    
T  45368775 aaattgaaatatttaacttttttataaaataatttctttttttggaatccttaaagagtgcccccgccccgggggcactcgttaaaaagat 45368865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 383
Target Start/End: Complemental strand, 12002365 - 12002259
Alignment:
Q  277 taaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaag 376  Q
    ||||||| || | |||||||||||   |||||||| | |||||||||| ||||  ||| || |||||||||||||||| |||  ||| |||| |||||||    
T  12002365 taaatagtaactttttataaaaatttgtgtaatcagtgcattggaaattgaaaacttttacatttttaaagaataattacttaatttagtatacttaaag 12002266  T
Q  377 agtgccc 383  Q
    |||||||    
T  12002265 agtgccc 12002259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 380
Target Start/End: Original strand, 24103049 - 24103162
Alignment:
Q  266 tttaaggactataaatagcaagtatttat-aaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttg 364  Q
    |||||||||||||| ||| |||||||| | ||||||||  ||||||| | ||| |||||||||||  ||| || |||| ||| ||||||| ||| ||||     
T  24103049 tttaaggactataagtagtaagtatttgtgaaaaatac--gtaatcattgcatcggaaatcgaaacatttgaccttttaaaaaaataatttcttatttta 24103146  T
Q  365 gtatgcttaaagagtg 380  Q
    | ||||||||||||||    
T  24103147 gaatgcttaaagagtg 24103162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 344
Target Start/End: Original strand, 5217782 - 5217833
Alignment:
Q  293 ataaaaatacatgtaatcaatacattggaaatcgaaatgtttaactttttta 344  Q
    |||||||||  |||||||||||||| |||||||||||| ||| |||||||||    
T  5217782 ataaaaatatgtgtaatcaatacatcggaaatcgaaatatttgactttttta 5217833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 343
Target Start/End: Original strand, 17521038 - 17521077
Alignment:
Q  304 tgtaatcaatacattggaaatcgaaatgtttaactttttt 343  Q
    |||||||||||||||||||| |||||| ||||||||||||    
T  17521038 tgtaatcaatacattggaaaacgaaatatttaactttttt 17521077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 382
Target Start/End: Complemental strand, 31265061 - 31264990
Alignment:
Q  311 aatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcc 382  Q
    |||||||||||||| ||| ||||| ||||||||||||||||| | | |  ||| | ||||||||||||||||    
T  31265061 aatacattggaaattgaattgtttgacttttttaaagaataacttcctaatttagcatgcttaaagagtgcc 31264990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 363
Target Start/End: Original strand, 39333550 - 39333593
Alignment:
Q  320 gaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 363  Q
    ||||||||||||||| |||||||| |||||||||||||| ||||    
T  39333550 gaaatcgaaatgtttgacttttttgaagaataattgcttatttt 39333593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 380
Target Start/End: Complemental strand, 37167125 - 37167016
Alignment:
Q  270 aggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatg 369  Q
    ||||| |||||| | || |||| || ||||| | |||| ||||| |||||||||||||| | ||||| |||||| ||||||||||| || |||||  |||    
T  37167125 aggaccataaatggtaactattcatgaaaatgcgtgtattcaatgcattggaaatcgaactatttaa-ttttttgaagaataattgtttattttgaaatg 37167027  T
Q  370 cttaaagagtg 380  Q
     ||||||||||    
T  37167026 tttaaagagtg 37167016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 377
Target Start/End: Original strand, 5293711 - 5293852
Alignment:
Q  237 aaatgttaacgagtgctctc-gatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgttta 335  Q
    |||||||||||||||||  | || ||| | ||||||||| ||||  |  |||||||||| ||||| |||||||| | | ||||  ||||| |||| ||||    
T  5293711 aaatgttaacgagtgcttcctgagacactctttaaggaccataagcaagaagtatttatgaaaatgcatgtaattattgcattaaaaatcaaaatattta 5293810  T
Q  336 acttttttaaagaataattgcttgttttggtatgcttaaaga 377  Q
    |||||| ||||||| |||| ||| ||||   |||||||||||    
T  5293811 acttttataaagaacaattacttattttaaaatgcttaaaga 5293852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 380
Target Start/End: Original strand, 37564374 - 37564443
Alignment:
Q  311 aatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 380  Q
    |||||||||||||| ||| | ||| ||||||||||||||||||| |||  ||| | ||| ||||||||||    
T  37564374 aatacattggaaattgaactatttgacttttttaaagaataatttcttaatttagcatgtttaaagagtg 37564443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 380
Target Start/End: Original strand, 42760181 - 42760258
Alignment:
Q  303 atgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 380  Q
    ||||||||||| |||||||||| ||||  ||| | |||||||  |||||||| ||  |||||| ||||||||||||||    
T  42760181 atgtaatcaatgcattggaaattgaaacatttgatttttttatggaataatttctccttttggaatgcttaaagagtg 42760258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 380
Target Start/End: Original strand, 7528262 - 7528338
Alignment:
Q  304 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 380  Q
    ||||||||||  ||||||||||||||| ||| |||||  |||||||||||| ||| ||||   ||||||||| ||||    
T  7528262 tgtaatcaatgtattggaaatcgaaatatttgactttcgtaaagaataattacttattttaaaatgcttaaaaagtg 7528338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 4e-48; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 266 - 408
Target Start/End: Complemental strand, 30509425 - 30509287
Alignment:
Q  266 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | ||||||||||||||||||||| ||||||    
T  30509425 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatgcattgaaaatcgaaatgtttgatttttttaaagaataattgcttattttgg 30509326  T
Q  366 tatgcttaaagagtgcccgccccggagacactcgttaacaaga 408  Q
    ||||||||||||||    |  ||||||||||||||||||||||    
T  30509325 tatgcttaaagagt----gttccggagacactcgttaacaaga 30509287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 272 - 409
Target Start/End: Original strand, 13070645 - 13070783
Alignment:
Q  272 gactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgct 371  Q
    |||||||||||| || ||||||| |||| | |||||||||||  ||||||||||  ||  ||||||||||| ||| ||| ||||||| |||| | ||       
T  13070645 gactataaatagtaactatttatgaaaaaatatgtaatcaatgtattggaaatcacaacatttaactttttaaaaaaattattgcttattttagaatatc 13070744  T
Q  372 taaagagtg-cccgccccggagacactcgttaacaagat 409  Q
    ||||||||| |||||||| ||  ||||||||||||||||    
T  13070745 taaagagtgccccgccccagatgcactcgttaacaagat 13070783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 327 - 379
Target Start/End: Complemental strand, 30250663 - 30250611
Alignment:
Q  327 aaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagt 379  Q
    |||||||| |||||||| ||||||||||| |||| ||||||||||||||||||    
T  30250663 aaatgtttgacttttttgaagaataattgtttgtcttggtatgcttaaagagt 30250611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 408
Target Start/End: Original strand, 13070474 - 13070646
Alignment:
Q  237 aaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaa 336  Q
    ||||||||||||||||   ||| ||| | |||||| ||||||||||| || ||||||| |||| |  ||||||||||  ||||||||||  ||  |||||    
T  13070474 aaatgttaacgagtgcctccgagacactctttaag-actataaatagtaactatttatgaaaaaatgtgtaatcaatgtattggaaatcacaacatttaa 13070572  T
Q  337 cttttttaaagaataattgcttgttttggtatgcttaaagagtg--cccgccccggagacactcgttaacaaga 408  Q
    |||||| ||| ||| ||||||| |||| | ||   |||||||||  |||||||| ||  |||||||||||||||    
T  13070573 ctttttaaaaaaattattgcttattttagaatatctaaagagtgcccccgccccagatgcactcgttaacaaga 13070646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 383
Target Start/End: Original strand, 31702748 - 31702854
Alignment:
Q  277 taaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaag 376  Q
    ||||||| || | ||||||||||||  |||||||||| |||| |||||  ||||  |||||||||||| | ||||||| ||| |||||  || |||||||    
T  31702748 taaatagtaactttttataaaaatatgtgtaatcaatgcattagaaattaaaatacttaacttttttataaaataatttcttcttttgaaattcttaaag 31702847  T
Q  377 agtgccc 383  Q
    |||||||    
T  31702848 agtgccc 31702854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 383
Target Start/End: Original strand, 12383042 - 12383132
Alignment:
Q  293 ataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 383  Q
    |||||||||  | |||||||| ||| ||||||| |||| ||||||||||||| | ||||||| ||  |||||  || ||||||||||||||    
T  12383042 ataaaaatatgtataatcaatgcatcggaaatcaaaatatttaacttttttataaaataatttctccttttgaaattcttaaagagtgccc 12383132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 6e-35; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 236 - 363
Target Start/End: Original strand, 46711882 - 46712008
Alignment:
Q  236 aaaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgttta 335  Q
    |||||||||||||||| ||||  |||| ||||||||||| ||||||| ||||||||||||||||| |||||||||||| ||||||||||| ||||||||     
T  46711882 aaaatgttaacgagtg-tctccgtacactttttaaggaccataaataacaagtatttataaaaatgcatgtaatcaatgcattggaaatcaaaatgtttg 46711980  T
Q  336 acttttttaaagaataattgcttgtttt 363  Q
    ||||||||||||||||||| ||| ||||    
T  46711981 acttttttaaagaataattacttatttt 46712008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 231 - 382
Target Start/End: Complemental strand, 37708580 - 37708430
Alignment:
Q  231 tatggaaaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaat 330  Q
    ||||||||||||||||||||||||| |   |||| |||||| ||||||  ||  |  |||||||||||||||||||||||| | ||||| |||| |||||    
T  37708580 tatggaaaatgttaacgagtgctctgggg-cattctttaagaactatatgtaaaacatatttataaaaatacatgtaatcagtgcattgaaaattgaaat 37708482  T
Q  331 gtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcc 382  Q
    |||||||||||||||||| ||||||||| ||||  |||||||||||||||||    
T  37708481 gtttaacttttttaaagactaattgcttattttaatatgcttaaagagtgcc 37708430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 266 - 359
Target Start/End: Complemental strand, 52309277 - 52309184
Alignment:
Q  266 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttg 359  Q
    ||||||| |||||| |||||||||||||||||||||| |||||||||| |||||||||||||||| ||| || |||||||||||||||||||||    
T  52309277 tttaagggctataagtagcaagtatttataaaaatacgtgtaatcaatgcattggaaatcgaaatattttacctttttaaagaataattgcttg 52309184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 232 - 377
Target Start/End: Original strand, 38457179 - 38457324
Alignment:
Q  232 atggaaaatgttaacgagtgct-ctcg-atacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaa 329  Q
    |||||||||||||||||||||| || | |||| | ||||||| || |||||||| |||||||||  |||||||||||||||||| ||||| ||||| |||    
T  38457179 atggaaaatgttaacgagtgcttctgggatac-tcttttaagaaccataaatagtaagtatttacgaaaatacatgtaatcaatgcattgaaaatcaaaa 38457277  T
Q  330 tgtttaacttttttaaagaataattgcttgttttggtatgcttaaaga 377  Q
    | ||||| ||||||||||||||||||||| || | | |||||||||||    
T  38457278 tatttaa-ttttttaaagaataattgcttattatagaatgcttaaaga 38457324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 285 - 380
Target Start/End: Original strand, 39400293 - 39400388
Alignment:
Q  285 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 380  Q
    ||||||||||||||||||||||||| ||| ||||| ||||  ||||||||||||| ||||||||||||||  || |||| |||| |||||||||||    
T  39400293 aagtatttataaaaatacatgtaattaatgcattgaaaattaaaatgtttaacttgtttaaagaataattaattattttagtatacttaaagagtg 39400388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 237 - 354
Target Start/End: Complemental strand, 40546464 - 40546348
Alignment:
Q  237 aaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttat-aaaaatacatgtaatcaatacattggaaatcgaaatgttta 335  Q
    |||||||||||||||  || || |||||||||||| || |||| ||| |||||||||| |||||| |||||||||||| |||||||||||||||| |||     
T  40546464 aaatgttaacgagtgtcct-gagacattttttaag-accataagtagtaagtatttatgaaaaatgcatgtaatcaatgcattggaaatcgaaatatttg 40546367  T
Q  336 acttttttaaagaataatt 354  Q
    ||||||||||| |||||||    
T  40546366 acttttttaaaaaataatt 40546348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 299 - 381
Target Start/End: Original strand, 50217002 - 50217083
Alignment:
Q  299 atacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgc 381  Q
    ||||||||||||||| ||||| ||||||||||| || |||| ||||||||||||||||||||||| ||||| |||||||||||    
T  50217002 atacatgtaatcaat-cattgaaaatcgaaatgattgacttctttaaagaataattgcttgttttagtatgtttaaagagtgc 50217083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 238 - 375
Target Start/End: Original strand, 46188549 - 46188685
Alignment:
Q  238 aatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaac 337  Q
    ||||||||||||||||  ||| |||||| |||||||| |||| ||| |||||||||| ||||| |||||| ||||| ||| | |||||| ||| ||| ||    
T  46188549 aatgttaacgagtgcttccgagacatttattaaggaccataagtagtaagtatttatgaaaatgcatgtagtcaatgcatcgaaaatcg-aatatttgac 46188647  T
Q  338 ttttttaaagaataattgcttgttttggtatgcttaaa 375  Q
    ||| ||||| ||||||| ||| |||||| |||||||||    
T  46188648 tttcttaaacaataattacttattttggaatgcttaaa 46188685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 234 - 379
Target Start/End: Original strand, 48322172 - 48322316
Alignment:
Q  234 ggaaaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtt 333  Q
    ||||||||||||||||||||| ||   || | ||||||||| |||| ||| | |||||||| |||| |||||||||||||  ||||||||||||||  ||    
T  48322172 ggaaaatgttaacgagtgctc-cggggcactctttaaggaccataagtagtaggtatttatgaaaaaacatgtaatcaatgtattggaaatcgaaacatt 48322270  T
Q  334 taacttttttaaagaataattgcttgttttggtatgcttaaagagt 379  Q
    | ||||||| ||| ||||||| ||| |||| | |||||||||||||    
T  48322271 tgactttttaaaaaaataattacttattttagaatgcttaaagagt 48322316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 383
Target Start/End: Complemental strand, 30082997 - 30082849
Alignment:
Q  237 aaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaa 336  Q
    |||||||||||||||   |||  ||| | ||||||  |||||||||| |||||||| ||||||| |||||||||| | | || | ||| ||||| ||| |    
T  30082997 aaatgttaacgagtgtcttcgggacactctttaagacctataaatagtaagtatttttaaaaatccatgtaatcatttctttaggaattgaaatatttga 30082898  T
Q  337 ctttttt--aaagaataattgcttgttttggtatgcttaaagagtgccc 383  Q
    |||||||  ||||||||| ||||| |||| | |||||||||||||||||    
T  30082897 cttttttttaaagaataactgcttattttagaatgcttaaagagtgccc 30082849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 383
Target Start/End: Complemental strand, 52309047 - 52309008
Alignment:
Q  344 aaagaataattgcttgttttggtatgcttaaagagtgccc 383  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  52309047 aaagaataattgcttgttttggtatgcttaaagagtgccc 52309008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 262 - 363
Target Start/End: Original strand, 31901804 - 31901904
Alignment:
Q  262 attttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtt 361  Q
    ||||||||||||| |||||||  |||||||||| ||||| ||||||||||||| ||| |||||| |||| | | || |||||||| ||||||| ||| ||    
T  31901804 attttttaaggaccataaataataagtatttatgaaaatgcatgtaatcaatatattagaaatcaaaatatatgac-tttttaaacaataattacttatt 31901902  T
Q  362 tt 363  Q
    ||    
T  31901903 tt 31901904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 354
Target Start/End: Complemental strand, 40392502 - 40392413
Alignment:
Q  265 ttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataatt 354  Q
    |||||||||  |||| ||| || ||||||| |||||| ||||||||||| |||| |||||  |||| ||||||||||||||||| |||||    
T  40392502 ttttaaggaacataagtagtaaatatttatgaaaatatatgtaatcaatgcattagaaataaaaatatttaacttttttaaagagtaatt 40392413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 365
Target Start/End: Original strand, 24658464 - 24658532
Alignment:
Q  297 aaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 365  Q
    |||| |||||||| ||||  || ||||||||||| ||||||||||||||||||||||| ||| ||||||    
T  24658464 aaatgcatgtaattaatatcttagaaatcgaaatatttaacttttttaaagaataatttcttattttgg 24658532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 383
Target Start/End: Complemental strand, 25461561 - 25461462
Alignment:
Q  285 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgttta-acttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 383  Q
    ||||||||  |||||| |||||||||| | | |||||||| ||||| |||  |||||||||||||||||| |||| |||||  ||| |||||||||||||    
T  25461561 aagtattttaaaaaatgcatgtaatcattgccttggaaattgaaatattttgacttttttaaagaataatggcttattttgcaatgtttaaagagtgccc 25461462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 380
Target Start/End: Complemental strand, 23642786 - 23642744
Alignment:
Q  338 ttttttaaagaataattgcttgttttggtatgcttaaagagtg 380  Q
    |||||| |||||||||||||| |||||||||||||||||||||    
T  23642786 tttttttaagaataattgcttattttggtatgcttaaagagtg 23642744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 383
Target Start/End: Complemental strand, 1511407 - 1511326
Alignment:
Q  303 atgtaatcaatacattggaaatcgaaatgtttaacttttttaaag-aataattgcttgttttggtatgcttaaagagtgccc 383  Q
    ||||||||||| |||||||||| ||||| ||| || ||||| | | ||||||| ||| |||||| |||||||||||||||||    
T  1511407 atgtaatcaatgcattggaaattgaaatctttgacatttttgatggaataatttcttcttttggcatgcttaaagagtgccc 1511326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 383
Target Start/End: Original strand, 41571601 - 41571682
Alignment:
Q  303 atgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaa-taattgcttgttttggtatgcttaaagagtgccc 383  Q
    ||||||||||| |||| ||||| ||||| |||  ||||||||| ||| ||||| ||| |||||| |||||||||||||||||    
T  41571601 atgtaatcaatgcattcgaaattgaaatttttggcttttttaatgaaataatttcttcttttggaatgcttaaagagtgccc 41571682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 358
Target Start/End: Original strand, 47115310 - 47115403
Alignment:
Q  266 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaag-aataattgctt 358  Q
    ||||||||| |||||||  |||||||||| |||| ||||||||||||| ||||| ||||| |||  ||| | ||||| |||| |||||||||||    
T  47115310 tttaaggaccataaataataagtatttatcaaaaaacatgtaatcaatgcattgaaaatcaaaacatttgattttttaaaagaaataattgctt 47115403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 382
Target Start/End: Original strand, 8703339 - 8703427
Alignment:
Q  294 taaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcc 382  Q
    ||||||| |||||||| | | | || |||||| |||| ||||||||||||||| || |||||||| |||| | |||||||| |||||||    
T  8703339 taaaaatgcatgtaatgattgccttagaaatcaaaatatttaacttttttaaataacaattgcttattttagaatgcttaacgagtgcc 8703427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 382
Target Start/End: Original strand, 9055226 - 9055314
Alignment:
Q  294 taaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcc 382  Q
    ||||||| |||||||| | | | || |||||| |||| ||||||||||||||| || |||||||| |||| | |||||||| |||||||    
T  9055226 taaaaatgcatgtaatgattgccttagaaatcaaaatatttaacttttttaaataacaattgcttattttagaatgcttaacgagtgcc 9055314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 354
Target Start/End: Complemental strand, 11404791 - 11404727
Alignment:
Q  290 tttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataatt 354  Q
    |||||||||||||||||||| ||||||||  ||||  |||| ||||||||||||| | |||||||    
T  11404791 tttataaaaatacatgtaattaatacattaaaaattaaaatatttaacttttttataaaataatt 11404727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 383
Target Start/End: Original strand, 18399194 - 18399274
Alignment:
Q  304 tgtaatcaatacattggaaatcgaaatgtttaactttttta-aagaataattgcttgttttggtatgcttaaagagtgccc 383  Q
    |||||||||| ||| |||||||||||| ||| ||||||||| || ||| ||| ||| |||||| || ||||||||||||||    
T  18399194 tgtaatcaatgcatcggaaatcgaaatatttgacttttttataaaaattatttcttcttttggaatccttaaagagtgccc 18399274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 50368424 - 50368500
Alignment:
Q  285 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 363  Q
    ||||||||||||||||| ||  ||||||| || | |||||| |||| ||| ||||||||||||||||||| ||| ||||    
T  50368424 aagtatttataaaaatatat--aatcaatgcaatagaaatcaaaatatttgacttttttaaagaataattacttatttt 50368500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 408
Target Start/End: Complemental strand, 34759007 - 34758900
Alignment:
Q  297 aaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcccgccccggagacac 396  Q
    ||||| ||||||||||| |||  | | ||||||| ||| ||||||||| | ||||||| ||| |||| | || ||||||||||    ||||||||| |||    
T  34759007 aaatatatgtaatcaatgcatcaggagtcgaaatatttcacttttttataaaataattacttctttttgaatccttaaagagt----gccccggaggcac 34758912  T
Q  397 tcgttaacaaga 408  Q
    ||||||||||||    
T  34758911 tcgttaacaaga 34758900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 352
Target Start/End: Complemental strand, 43804033 - 43803992
Alignment:
Q  311 aatacattggaaatcgaaatgtttaacttttttaaagaataa 352  Q
    |||||||||||||| ||| ||||| |||||||||||||||||    
T  43804033 aatacattggaaattgaattgtttgacttttttaaagaataa 43803992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 352
Target Start/End: Original strand, 54290819 - 54290860
Alignment:
Q  311 aatacattggaaatcgaaatgtttaacttttttaaagaataa 352  Q
    |||||||||||||| ||| ||||| |||||||||||||||||    
T  54290819 aatacattggaaattgaactgtttgacttttttaaagaataa 54290860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 358
Target Start/End: Original strand, 5504809 - 5504884
Alignment:
Q  285 aagtatttataaaaatacatgtaatca--atacattggaaatcgaaatgtttaacttttttaaagaataattgctt 358  Q
    |||||||||| ||||| ||||||||||  |||| ||  |||| ||||| ||| ||||||||||||||||| |||||    
T  5504809 aagtatttatgaaaatgcatgtaatcataataccttaaaaattgaaatatttgacttttttaaagaataactgctt 5504884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 31681233 - 31681165
Alignment:
Q  262 attttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaat 330  Q
    ||||||||||||| | |||||  |||||||||| ||||| ||||||||||||  ||| |||||| ||||    
T  31681233 attttttaaggacaaaaaataataagtatttatgaaaatgcatgtaatcaatgtattagaaatcaaaat 31681165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 31917461 - 31917529
Alignment:
Q  262 attttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaat 330  Q
    ||||||||||||| | |||||  |||||||||| ||||| ||||||||||||  ||| |||||| ||||    
T  31917461 attttttaaggacaaaaaataataagtatttatgaaaatgcatgtaatcaatgtattagaaatcaaaat 31917529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 354
Target Start/End: Complemental strand, 55110112 - 55110048
Alignment:
Q  290 tttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataatt 354  Q
    ||||| |||||| ||||||||||| ||||| |||||||||| ||| | ||||||| | |||||||    
T  55110112 tttatgaaaatatatgtaatcaatgcattgaaaatcgaaatatttgatttttttataaaataatt 55110048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 266 - 382
Target Start/End: Complemental strand, 13811148 - 13811033
Alignment:
Q  266 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 365  Q
    ||||||| |||||||||| |||||||||||||||||| ||| |||||| ||||||||||  |||| ||| ||||||||||||||||||||||||||||||    
T  13811148 tttaagggctataaatagaaagtatttataaaaatacgtgtgatcaatgcattggaaattaaaatattttacttttttaaagaataattgcttgttttgg 13811049  T
Q  366 tatgcttaaagagtgcc 382  Q
    | |||||||||||||||    
T  13811048 t-tgcttaaagagtgcc 13811033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 281 - 406
Target Start/End: Complemental strand, 18223208 - 18223087
Alignment:
Q  281 tagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 380  Q
    |||||||||||||||||||| | | |||||||| |||||||||| ||||| ||  | |||||||||||||||||||||||||||||||||||||| |||     
T  18223208 tagcaagtatttataaaaatgcgtataatcaatgcattggaaattgaaatattctatttttttaaagaataattgcttgttttggtatgcttaaaaagt- 18223110  T
Q  381 cccgccccggagacactcgttaacaa 406  Q
       | |||| ||||||||||||||||    
T  18223109 ---gtcccgaagacactcgttaacaa 18223087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 274 - 379
Target Start/End: Original strand, 2825961 - 2826066
Alignment:
Q  274 ctataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgctta 373  Q
    |||||| ||| ||||||||||||||||   |||||||||| |||||||||||||||| ||| ||||||||||| ||||||| ||| |||| |||||||||    
T  2825961 ctataagtagtaagtatttataaaaatgtgtgtaatcaatgcattggaaatcgaaatattttacttttttaaaaaataatttcttattttagtatgctta 2826060  T
Q  374 aagagt 379  Q
    ||||||    
T  2826061 aagagt 2826066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 266 - 379
Target Start/End: Complemental strand, 27133185 - 27133072
Alignment:
Q  266 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 365  Q
    ||||| |||||||| ||| |||| ||| ||||||| ||| |||||||| |||||||||||||| ||| | ||||||||||||||||||||||| |||| |    
T  27133185 tttaaagactataagtagtaagtgtttttaaaaatgcatataatcaatgcattggaaatcgaattgtatgacttttttaaagaataattgcttattttag 27133086  T
Q  366 tatgcttaaagagt 379  Q
    |||| |||||||||    
T  27133085 tatgtttaaagagt 27133072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 266 - 380
Target Start/End: Complemental strand, 16717718 - 16717604
Alignment:
Q  266 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 365  Q
    ||||||||  |||| ||| |||||||||| ||||| ||| |||||||| | ||||||||| |||| ||||| ||||||||||||||||| ||| |||| |    
T  16717718 tttaaggaacataagtagtaagtatttatgaaaatgcatataatcaatgctttggaaatcaaaatatttaatttttttaaagaataattacttattttag 16717619  T
Q  366 tatgcttaaagagtg 380  Q
     ||||||||||||||    
T  16717618 aatgcttaaagagtg 16717604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 266 - 382
Target Start/End: Original strand, 26408338 - 26408456
Alignment:
Q  266 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaag--aataattgcttgtttt 363  Q
    |||||||| ||| || ||||||||||||||||||||  ||||||||||  ||| ||||| ||||| ||| ||||||||      ||||||||||||||||    
T  26408338 tttaaggaatattaaaagcaagtatttataaaaatatgtgtaatcaatgtattagaaattgaaatattttactttttttttttaaataattgcttgtttt 26408437  T
Q  364 ggtatgcttaaagagtgcc 382  Q
    |||||||||||||||||||    
T  26408438 ggtatgcttaaagagtgcc 26408456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 237 - 383
Target Start/End: Complemental strand, 3882754 - 3882608
Alignment:
Q  237 aaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaa 336  Q
    |||||||||||||||| | ||  ||| | |||||| || |||| ||| ||||| | || |||||   |||||||||| ||||| ||| |||||| ||| |    
T  3882754 aaatgttaacgagtgcccccgggacactctttaagaaccataagtagtaagtactcatgaaaatgtgtgtaatcaatgcattgaaaaccgaaatatttga 3882655  T
Q  337 cttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 383  Q
    | |||||||||||||||||||| |||| | |||||||||||||||||    
T  3882654 cctttttaaagaataattgcttattttagaatgcttaaagagtgccc 3882608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 229 - 354
Target Start/End: Complemental strand, 2889054 - 2888929
Alignment:
Q  229 tttatggaaaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaa 328  Q
    ||||||| ||||| |||| |||||  |||  ||| | |||||||||||||| ||| | |||||||| ||||    |||| ||||||||||||||||||||    
T  2889054 tttatgggaaatggtaacaagtgccatcgggacactctttaaggactataagtagtatgtatttatgaaaaagtgtgtagtcaatacattggaaatcgaa 2888955  T
Q  329 atgtttaacttttttaaagaataatt 354  Q
    || ||||||||||||||| |||||||    
T  2888954 atatttaacttttttaaaaaataatt 2888929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 381
Target Start/End: Original strand, 42924413 - 42924529
Alignment:
Q  265 ttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttg 364  Q
    |||||||| | |||||||| || ||||||| ||||| |||||||||||||| ||| |||| ||||| ||| | |||||| || ||||||| ||| ||||     
T  42924413 ttttaaggtccataaatagtaaatatttatgaaaatgcatgtaatcaatacgttgaaaattgaaatatttgattttttttaaaaataattacttctttta 42924512  T
Q  365 gtatgcttaaagagtgc 381  Q
    | |||||||||||||||    
T  42924513 gaatgcttaaagagtgc 42924529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 260 - 375
Target Start/End: Complemental strand, 35312218 - 35312103
Alignment:
Q  260 acattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttg 359  Q
    |||||| |||||||| |||||||| || |||||||||||||  ||||||| ||||||||| ||||  |||| ||||| |||||||||||| | ||| ||     
T  35312218 acatttcttaaggaccataaatagtaaatatttataaaaatgtatgtaatgaatacattgtaaattaaaatatttaatttttttaaagaaaatttgttta 35312119  T
Q  360 ttttggtatgcttaaa 375  Q
    |||| | |||||||||    
T  35312118 ttttagaatgcttaaa 35312103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 285 - 381
Target Start/End: Complemental strand, 8964482 - 8964386
Alignment:
Q  285 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgc 381  Q
    |||||||||| |||||   |||||||||| |||||||||| ||||| ||| ||||||||||||||||||| |||  ||| | ||||||||| |||||    
T  8964482 aagtatttatgaaaatttgtgtaatcaatgcattggaaattgaaatattttacttttttaaagaataattacttaatttagaatgcttaaacagtgc 8964386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 266 - 365
Target Start/End: Complemental strand, 10824747 - 10824647
Alignment:
Q  266 tttaaggactataaatagcaagtat-ttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttg 364  Q
    ||||| ||| |||| ||| |||||| |||| |||||||||||||||||||  ||||||||  |||||||| ||||||| ||||||||| ||||| |||||    
T  10824747 tttaaagaccataattagtaagtatattatgaaaatacatgtaatcaatatcttggaaattaaaatgtttgactttttaaaagaataactgcttattttg 10824648  T
Q  365 g 365  Q
    |    
T  10824647 g 10824647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 382
Target Start/End: Original strand, 6761760 - 6761839
Alignment:
Q  303 atgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcc 382  Q
    ||||||||||| |||||||||| ||||| ||| ||||||||| ||||| |||  || |||||| ||||||||||||||||    
T  6761760 atgtaatcaatgcattggaaattgaaatatttgacttttttatagaatgatttattcttttggaatgcttaaagagtgcc 6761839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 382
Target Start/End: Original strand, 45076186 - 45076241
Alignment:
Q  327 aaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcc 382  Q
    |||| ||||||||||||||||||||||||||| |||| ||||| ||||||||||||    
T  45076186 aaatatttaacttttttaaagaataattgcttattttagtatgtttaaagagtgcc 45076241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 266 - 380
Target Start/End: Complemental strand, 6797306 - 6797192
Alignment:
Q  266 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 365  Q
    ||||||||  ||||||| ||| ||||||| |||||||||||||| | | ||||| ||| | |||| ||| |||||||||||  ||||||| || |||| |    
T  6797306 tttaaggatcataaataacaaatatttatgaaaatacatgtaattattgcattgaaaaacaaaatatttgacttttttaaatgataattgattattttag 6797207  T
Q  366 tatgcttaaagagtg 380  Q
    |||| ||||||||||    
T  6797206 tatgtttaaagagtg 6797192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 380
Target Start/End: Original strand, 33275940 - 33276004
Alignment:
Q  316 attggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 380  Q
    |||| |||| ||||| ||||||||||||||| ||||||| |||||||| | ||||||||||||||    
T  33275940 attgaaaattgaaatatttaacttttttaaaaaataatttcttgttttagaatgcttaaagagtg 33276004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 409
Target Start/End: Original strand, 14102296 - 14102436
Alignment:
Q  266 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaa-taattgcttgttttg 364  Q
    |||||||||||||| ||| || ||||||| ||||    ||||||||||  ||||||||||||||| ||||||||||||    || ||||| ||| |||||    
T  14102296 tttaaggactataagtagtaactatttatgaaaaagtgtgtaatcaatgtattggaaatcgaaatatttaacttttttttttaaataatttcttattttg 14102395  T
Q  365 gtatgcttaaagagtgcccgccccggagacactcgttaacaagat 409  Q
    | ||| ||||||||||| |    ||||| ||||||||||||||||    
T  14102396 gcatgtttaaagagtgctc----cggaggcactcgttaacaagat 14102436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 379
Target Start/End: Original strand, 37617380 - 37617499
Alignment:
Q  260 acattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttg 359  Q
    ||||||||||| ||  |||| |||||||| ||||| |||||  ||| |||||||  |||||||||  |||| ||||| |||||||||||||||||  ||     
T  37617380 acattttttaaagatcataagtagcaagtgtttatgaaaatgtatgcaatcaatgtattggaaataaaaatatttaatttttttaaagaataattattta 37617479  T
Q  360 ttttggtatgcttaaagagt 379  Q
    ||||   |||||||||||||    
T  37617480 ttttaaaatgcttaaagagt 37617499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 383
Target Start/End: Complemental strand, 10204306 - 10204149
Alignment:
Q  229 tttatggaaaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatt--tat-aaaaatacatgtaatcaatacattggaaatc 325  Q
    |||||| |||||||||| ||||||   ||  ||| ||||||||||| |||| ||| || ||||  ||| |||||| |||||||||||| ||||| |||||    
T  10204306 tttatgaaaaatgttaatgagtgcctccgtaacactttttaaggaccataagtagtaaatattagtatgaaaaatgcatgtaatcaatgcattgaaaatc 10204207  T
Q  326 gaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 383  Q
    ||||  ||| | |||||| ||||||||||  || |||||  ||| |||||||||||||    
T  10204206 gaaacatttgaattttttgaagaataattatttattttgtaatggttaaagagtgccc 10204149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 358
Target Start/End: Original strand, 35477693 - 35477778
Alignment:
Q  274 ctataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaac-ttttttaaagaataattgctt 358  Q
    |||||| ||| |||||||| ||||||| ||||| |||| |   |||||||||||||| ||| || |||||||||||||||||||||    
T  35477693 ctataagtagtaagtatttttaaaaatgcatgtcatcattgtcttggaaatcgaaatatttgactttttttaaagaataattgctt 35477778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 383
Target Start/End: Original strand, 12075564 - 12075636
Alignment:
Q  311 aatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 383  Q
    |||||||||||||| ||||| ||| |||||| ||   |||| || ||| ||||||||||||||||||||||||    
T  12075564 aatacattggaaattgaaatatttgacttttgtatgaaatagtttcttcttttggtatgcttaaagagtgccc 12075636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 341
Target Start/End: Complemental strand, 19495293 - 19495237
Alignment:
Q  285 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaactttt 341  Q
    ||||||||||||||||   |||||||||| |||||||||||||||| ||| ||||||    
T  19495293 aagtatttataaaaatgggtgtaatcaatgcattggaaatcgaaatatttgactttt 19495237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 380
Target Start/End: Original strand, 44941108 - 44941192
Alignment:
Q  296 aaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 380  Q
    |||||| ||||||||||| ||| |||||||||||| ||||||||||||| |  ||| || ||| |||| | || |||||||||||    
T  44941108 aaaatatatgtaatcaatgcatcggaaatcgaaatctttaacttttttataacatactttcttcttttagaatccttaaagagtg 44941192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 376
Target Start/End: Original strand, 9153483 - 9153581
Alignment:
Q  277 taaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaag 376  Q
    ||||||| |||| |||||||||||   |||| ||||| |||||||||| ||| |||||  |||||||||||||||||| |||  ||||| || |||||||    
T  9153483 taaatagtaagt-tttataaaaatttgtgtattcaatgcattggaaattgaagtgtttgccttttttaaagaataatttcttaatttggaatccttaaag 9153581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 363
Target Start/End: Original strand, 11001439 - 11001537
Alignment:
Q  264 tttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 363  Q
    |||||||||||||||   || |||||||||| |||| || |||||| |||| |||| |||||||||  ||| || |||||||| ||||||||||| ||||    
T  11001439 tttttaaggactatatggagtaagtatttatgaaaaaacgtgtaattaatatattgaaaatcgaaacatttgac-tttttaaaaaataattgcttatttt 11001537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 408
Target Start/End: Complemental strand, 31513823 - 31513724
Alignment:
Q  304 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcccgccccggagacactcgttaa 403  Q
    |||||||||| |||||||||||||||  ||||| |||||  || ||||||| ||| |||| | | |||||||||||    |||||||||||||||| |||    
T  31513823 tgtaatcaatgcattggaaatcgaaacatttaaatttttataaaaataatt-cttattttagaaagcttaaagagt----gccccggagacactcgctaa 31513729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 313
Target Start/End: Complemental strand, 45303627 - 45303580
Alignment:
Q  266 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaat 313  Q
    ||||||||| |||||||| |||||||||| ||||| ||||||||||||    
T  45303627 tttaaggaccataaatagtaagtatttatgaaaatgcatgtaatcaat 45303580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 352
Target Start/End: Complemental strand, 20128415 - 20128353
Alignment:
Q  290 tttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataa 352  Q
    ||||||||||||| |||||||||| |||||||| | | ||  ||| |||||||||||||||||    
T  20128415 tttataaaaatacgtgtaatcaatgcattggaatttgtaacatttgacttttttaaagaataa 20128353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 350
Target Start/End: Original strand, 27948007 - 27948092
Alignment:
Q  266 tttaaggactataaatagcaagtatttataaaaatacatgt-aatcaatacattggaaatcgaaatgtttaacttttttaaagaat 350  Q
    ||||||||  |||| ||| |||||||||| |||||   ||| ||||||| |||||||||||||||  ||| |||||||||||||||    
T  27948007 tttaaggatcataagtagtaagtatttatgaaaatgtgtgttaatcaatgcattggaaatcgaaacatttgacttttttaaagaat 27948092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 352
Target Start/End: Complemental strand, 32859849 - 32859808
Alignment:
Q  311 aatacattggaaatcgaaatgtttaacttttttaaagaataa 352  Q
    |||||||||||||| ||| ||||| |||||||||||||||||    
T  32859849 aatacattggaaattgaactgtttgacttttttaaagaataa 32859808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 383
Target Start/End: Complemental strand, 13538468 - 13538388
Alignment:
Q  303 atgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 383  Q
    ||||| ||||| |||||||||| ||| | ||| | |||||||||||||||||   |  ||| |||||||||||||||||||    
T  13538468 atgtattcaatgcattggaaattgaattatttgaattttttaaagaataattttctaatttagtatgcttaaagagtgccc 13538388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 352
Target Start/End: Complemental strand, 16944902 - 16944787
Alignment:
Q  237 aaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaa 336  Q
    ||||||||| |||||||| ||  ||| ||||||| |||  ||||| | |||| |||||||||||   |||| ||||||||||| |||| |||||| || |    
T  16944902 aaatgttaaagagtgctc-cgggacactttttaaagacgttaaatggtaagtttttataaaaatttgtgtattcaatacattgaaaattgaaatgattga 16944804  T
Q  337 c-ttttttaaagaataa 352  Q
    | |||||||||||||||    
T  16944803 ctttttttaaagaataa 16944787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 352
Target Start/End: Complemental strand, 17015567 - 17015452
Alignment:
Q  237 aaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaa 336  Q
    ||||||||| |||||||| ||  ||| ||||||| |||  ||||| | |||| |||||||||||   |||| ||||||||||| |||| |||||| || |    
T  17015567 aaatgttaaagagtgctc-cgggacactttttaaagacgttaaatggtaagtttttataaaaatttgtgtattcaatacattgaaaattgaaatgattga 17015469  T
Q  337 c-ttttttaaagaataa 352  Q
    | |||||||||||||||    
T  17015468 ctttttttaaagaataa 17015452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 237 - 351
Target Start/End: Original strand, 42890231 - 42890345
Alignment:
Q  237 aaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaa 336  Q
    ||||||||||||||| ||  |  ||| | ||||| |||||||| |||||||||||| ||||||||||||||||||||  ||||||||||||||||||| |    
T  42890231 aaatgttaacgagtgttcctgggacactctttaatgactataagtagcaagtatttttaaaaatacatgtaatcaatgtattggaaatcgaaatgtttga 42890330  T
Q  337 cttttttaaagaata 351  Q
    |||||||||| ||||    
T  42890331 cttttttaaaaaata 42890345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 262 - 375
Target Start/End: Original strand, 9533512 - 9533625
Alignment:
Q  262 attttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtt 361  Q
    ||||||||| |||||||||||  |||||||||||||||| | |||||||||| ||||| ||||| |||| ||| | ||||| ||| ||||||||||||||    
T  9533512 attttttaaagactataaataataagtatttataaaaatgcgtgtaatcaatgcattgaaaatcaaaatattttattttttaaaaaaataattgcttgtt 9533611  T
Q  362 ttggtatgcttaaa 375  Q
    ||| ||||||||||    
T  9533612 ttgatatgcttaaa 9533625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 266 - 375
Target Start/End: Complemental strand, 42911169 - 42911060
Alignment:
Q  266 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 365  Q
    |||||||||||||  ||| ||||||||||||||||||||||||||  | ||||| |||| ||||||||  ||||||||||||||||||||||| |||| |    
T  42911169 tttaaggactatatgtagaaagtatttataaaaatacatgtaatcggtgcattgaaaattgaaatgttcgacttttttaaagaataattgcttattttag 42911070  T
Q  366 tatgcttaaa 375  Q
    ||| ||||||    
T  42911069 tatacttaaa 42911060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 266 - 380
Target Start/End: Complemental strand, 1360645 - 1360531
Alignment:
Q  266 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 365  Q
    |||||||||||||| ||| | |||||||||||||    |||||||||| |||||||||||||||  ||||||||||||||| ||||||| ||  ||||||    
T  1360645 tttaaggactataagtagtatgtatttataaaaaagtgtgtaatcaatgcattggaaatcgaaacatttaacttttttaaaaaataattactaattttgg 1360546  T
Q  366 tatgcttaaagagtg 380  Q
     ||||||||||||||    
T  1360545 aatgcttaaagagtg 1360531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 266 - 380
Target Start/End: Original strand, 10031918 - 10032032
Alignment:
Q  266 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 365  Q
    |||||||||||||||||| | |||||||| ||||    |||||||||| |||||||||||||||  ||||||||||| ||| ||||||| ||  ||||||    
T  10031918 tttaaggactataaatagtatgtatttatgaaaaagtgtgtaatcaatgcattggaaatcgaaacatttaactttttaaaaaaataattactaattttgg 10032017  T
Q  366 tatgcttaaagagtg 380  Q
     ||||||||||||||    
T  10032018 aatgcttaaagagtg 10032032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 285 - 380
Target Start/End: Original strand, 33887869 - 33887963
Alignment:
Q  285 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 380  Q
    |||||||||| |||||| ||||||||||| ||||| |||| ||||| ||| |||||||||||||||||||  || |||||| ||||||||||||||    
T  33887869 aagtatttatgaaaata-atgtaatcaatgcattgaaaattgaaatatttgacttttttaaagaataattatttattttggaatgcttaaagagtg 33887963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 281 - 358
Target Start/End: Complemental strand, 15995983 - 15995905
Alignment:
Q  281 tagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaactt-ttttaaagaataattgctt 358  Q
    ||||||||| |||| ||||||  |||||||||| ||||| |||||||||| |||||||| |||||||||||| ||||||    
T  15995983 tagcaagtaattatgaaaatatgtgtaatcaatgcattgaaaatcgaaatatttaactttttttaaagaatagttgctt 15995905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 285 - 351
Target Start/End: Original strand, 40065799 - 40065865
Alignment:
Q  285 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaata 351  Q
    ||||||||||||||||||||||| || ||  |||| ||||| |||| ||||||||||||||||||||    
T  40065799 aagtatttataaaaatacatgtattcgatgtattgaaaatcaaaatatttaacttttttaaagaata 40065865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 285 - 377
Target Start/End: Original strand, 3256643 - 3256736
Alignment:
Q  285 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaactttt-ttaaagaataattgcttgttttggtatgcttaaaga 377  Q
    |||||||||| ||||||  |||| ||| | |||||||||||||||  ||| |||||| ||||||||||||||||| |||||  |||||||||||    
T  3256643 aagtatttatgaaaatatgtgtattcagtgcattggaaatcgaaacatttgactttttttaaagaataattgcttattttgaaatgcttaaaga 3256736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 329
Target Start/End: Original strand, 46127982 - 46128077
Alignment:
Q  234 ggaaaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaa 329  Q
    ||||||||||||||||||  |  |||| | |||||||||| |||||||||||||||||||| |||| |  || ||||||| ||||| |||| ||||    
T  46127982 ggaaaatgttaacgagtgtccctgataaactttttaaggattataaatagcaagtatttatgaaaaaatgtgcaatcaatccattgaaaattgaaa 46128077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 408
Target Start/End: Complemental strand, 47507681 - 47507581
Alignment:
Q  304 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcccgccccggagacactcgttaa 403  Q
    |||||||||||||| |||||| ||||| ||| | ||||||| | ||| ||| ||| |||| | || ||||||||||    ||||||||||||||||||||    
T  47507681 tgtaatcaatacatcggaaattgaaatctttgatttttttataaaattatttcttcttttagaatccttaaagagt----gccccggagacactcgttaa 47507586  T
Q  404 caaga 408  Q
    |||||    
T  47507585 caaga 47507581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 357
Target Start/End: Original strand, 44719424 - 44719484
Alignment:
Q  297 aaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgct 357  Q
    |||| ||||||||||||   || ||||||||||||||| ||||||||||| ||||||||||    
T  44719424 aaatgcatgtaatcaatgttttagaaatcgaaatgtttgacttttttaaaaaataattgct 44719484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 381
Target Start/End: Original strand, 8920737 - 8920815
Alignment:
Q  303 atgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgc 381  Q
    ||||||||||| |||||||||| ||||  ||| |||||| ||  |||||||| ||  |||||| |||||||||||||||    
T  8920737 atgtaatcaatgcattggaaattgaaacatttgacttttctatggaataatttctccttttggaatgcttaaagagtgc 8920815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 358
Target Start/End: Complemental strand, 14574843 - 14574749
Alignment:
Q  265 ttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaactt-ttttaaagaataattgctt 358  Q
    ||||||| || |||| || |||| | |||| ||||||  |||||||||| ||||| |||||||| | |||||||| |||||||||||| ||||||    
T  14574843 ttttaagaaccataagtaacaagcaattatgaaaatatgtgtaatcaatgcattgaaaatcgaagtatttaactttttttaaagaatagttgctt 14574749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 380
Target Start/End: Original strand, 676395 - 676483
Alignment:
Q  291 ttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 380  Q
    |||||||||||  |||||||||| ||||  |||||||||| |||||| |||||||  ||||||| ||| |||| | ||| ||||||||||    
T  676395 ttataaaaatatgtgtaatcaatgcatttaaaatcgaaatatttaac-tttttaataaataattacttattttagaatgtttaaagagtg 676483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 380
Target Start/End: Original strand, 28733764 - 28733869
Alignment:
Q  276 ataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaactttt-ttaaagaataattgcttgttttggtatgcttaa 374  Q
    |||||||| || ||||| ||||||| |||||||||| |    ||||| || |||| |||||||||| |||||||||||||| || ||||   ||||||||    
T  28733764 ataaatagaaaatatttttaaaaatgcatgtaatcattgtcatggaattcaaaatatttaactttttttaaagaataattgtttattttaaaatgcttaa 28733863  T
Q  375 agagtg 380  Q
    ||||||    
T  28733864 agagtg 28733869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 383
Target Start/End: Original strand, 5248671 - 5248747
Alignment:
Q  307 aatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 383  Q
    ||||||| |||||||||| | | | |||||| |||||||||||||||| |||  || || || ||||||||||||||    
T  5248671 aatcaatgcattggaaattggagtttttaacatttttaaagaataatttctttattaggaatccttaaagagtgccc 5248747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 383
Target Start/End: Original strand, 17157804 - 17157884
Alignment:
Q  304 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaag-aataattgcttgttttggtatgcttaaagagtgccc 383  Q
    |||||||||| |||||||||| ||||  ||| |||||||| | | ||||||| ||  |||||| |||||||||||||||||    
T  17157804 tgtaatcaatgcattggaaattgaaacatttgactttttttatggaataatttctccttttggaatgcttaaagagtgccc 17157884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 408
Target Start/End: Complemental strand, 28770537 - 28770448
Alignment:
Q  315 cattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcccgccccggagacactcgttaacaaga 408  Q
    |||||||||| | |||  || ||||||  ||||||||||| ||  |||||| |||||||||||||    ||||||||| |||||||||||||||    
T  28770537 cattggaaattgtaatagttgacttttcaaaagaataattactaattttgggatgcttaaagagt----gccccggaggcactcgttaacaaga 28770448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 266 - 383
Target Start/End: Original strand, 32017414 - 32017532
Alignment:
Q  266 tttaaggactataaatagcaagtatttataaaaa-tacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttg 364  Q
    ||||||| ||||||| |||||||||||||||||| |    ||||||||| ||||| |||| ||||| ||| |||||||||||||||||||||||||||||    
T  32017414 tttaagggctataaagagcaagtatttataaaaaatgtgagtaatcaatgcattgaaaattgaaatattttacttttttaaagaataattgcttgttttg 32017513  T
Q  365 gtatgcttaaagagtgccc 383  Q
     |||| |||||||||||||    
T  32017514 atatgtttaaagagtgccc 32017532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 276 - 383
Target Start/End: Original strand, 34032097 - 34032204
Alignment:
Q  276 ataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaa 375  Q
    |||| ||| |||||||| ||||||| |||||||||| | | || ||||| ||||| ||||||||||||||||||||||| ||| |||| | |||||||||    
T  34032097 ataagtagtaagtatttttaaaaatgcatgtaatcattgcctttgaaattgaaatatttaacttttttaaagaataattacttattttagaatgcttaaa 34032196  T
Q  376 gagtgccc 383  Q
    ||||||||    
T  34032197 gagtgccc 34032204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 266 - 355
Target Start/End: Original strand, 27833287 - 27833376
Alignment:
Q  266 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattg 355  Q
    ||||||||| | |||||| |||||||||| ||||| |||||||||||| ||||| |||||||||| ||| |||||| |||||||||||||    
T  27833287 tttaaggaccacaaatagtaagtatttatgaaaatgcatgtaatcaatgcattgtaaatcgaaatatttgacttttgtaaagaataattg 27833376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 27103087 - 27103205
Alignment:
Q  20 tccaacaattccatctctcaacattccaccattgccagcagtcacttcacttccaaaccttccttcaatcccaaccactttcccctccatcccatttttc 119  Q
    ||||||| |||||||||||||| |||||||||| ||| |   || ||||||||| ||||||||||||||| |||||| | || |||||||||| || |||    
T  27103087 tccaacacttccatctctcaactttccaccatttccatc---caattcacttcccaaccttccttcaatctcaaccattatctcctccatccctttcttc 27103183  T
Q  120 tccccacaaccttcaacctcta 141  Q
    || |||| ||||||||| ||||    
T  27103184 tctccaccaccttcaacatcta 27103205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 234 - 380
Target Start/End: Original strand, 10145305 - 10145451
Alignment:
Q  234 ggaaaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtt 333  Q
    ||||||||||||||||||| | |||  || | ||||||| ||  |||||| ||||||||||||||||   |||||| ||| ||||  ||||| |||| ||    
T  10145305 ggaaaatgttaacgagtgcccccgaggcactctttaagggctggaaatagtaagtatttataaaaatgtgtgtaattaatgcattcaaaatcaaaatatt 10145404  T
Q  334 taacttttttaaagaataattgcttgttttggtatgcttaaagagtg 380  Q
    | |||||||||||||||| ||  || ||||||| |||||||||||||    
T  10145405 ttacttttttaaagaatatttatttattttggtgtgcttaaagagtg 10145451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 17098205 - 17098321
Alignment:
Q  288 tatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcccgccc 387  Q
    ||||| |||||||  ||||||||| |   |||||||||||||| ||| ||||||||||| ||||||||||| |||||  ||| |||||||||    ||||    
T  17098205 tatttttaaaaatgaatgtaatcattgtcttggaaatcgaaatatttgacttttttaaataataattgcttattttgtgatgtttaaagagt----gccc 17098300  T
Q  388 cggagacactcgttaacaaga 408  Q
    ||| |||||||||||||||||    
T  17098301 cggcgacactcgttaacaaga 17098321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 304 - 375
Target Start/End: Complemental strand, 26663706 - 26663635
Alignment:
Q  304 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaa 375  Q
    ||||||||||||||||||||||||||| ||| ||||||||||| ||||||| ||| |||| | |||||||||    
T  26663706 tgtaatcaatacattggaaatcgaaatatttgacttttttaaaaaataatttcttattttagaatgcttaaa 26663635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 304 - 375
Target Start/End: Complemental strand, 26935301 - 26935230
Alignment:
Q  304 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaa 375  Q
    ||||||||||||||||||||||||||| ||| ||||||||||| ||||||| ||| |||| | |||||||||    
T  26935301 tgtaatcaatacattggaaatcgaaatatttgacttttttaaaaaataatttcttattttagaatgcttaaa 26935230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 27096784 - 27096897
Alignment:
Q  20 tccaacaattccatctctcaacattccaccattgccagcagtcacttcacttccaaaccttccttcaatcccaaccactttcccctccatcccatttttc 119  Q
    ||||||| |||||||||||||| |||||||||| ||| |   || ||||||||| ||| ||||||||||| |||||| | || |||||||||| || |||    
T  27096784 tccaacacttccatctctcaactttccaccatttccatc---caattcacttcccaacattccttcaatctcaaccattatctcctccatccctttcttc 27096880  T
Q  120 tccccacaaccttcaac 136  Q
    || |||| |||||||||    
T  27096881 tctccaccaccttcaac 27096897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 303 - 383
Target Start/End: Complemental strand, 27016743 - 27016663
Alignment:
Q  303 atgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 383  Q
    |||||||| || |||||||||| ||||| ||| |||||||||  |||||||| ||| |||||| |||||||||||||||||    
T  27016743 atgtaatcgatgcattggaaattgaaatttttgacttttttatggaataatttcttcttttggaatgcttaaagagtgccc 27016663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 380
Target Start/End: Complemental strand, 8761999 - 8761922
Alignment:
Q  303 atgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 380  Q
    |||| |||||||||||| |||| ||||| ||||||||||||| ||||||||| ||| |||| | || |||||||||||    
T  8761999 atgtcatcaatacattgaaaattgaaatatttaacttttttatagaataatttctttttttagaatccttaaagagtg 8761922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 383
Target Start/End: Complemental strand, 779192 - 779078
Alignment:
Q  268 taaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggta 367  Q
    |||||||||||||||| | |||||||  ||||    |||||||||| |||||||||||||||  ||||||| ||||||| ||||||| ||  |||| | |    
T  779192 taaggactataaatagtatgtatttacgaaaaagtgtgtaatcaatgcattggaaatcgaaacatttaact-ttttaaaaaataattactaatttttgaa 779094  T
Q  368 tgcttaaagagtgccc 383  Q
    || |||||||||||||    
T  779093 tgtttaaagagtgccc 779078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 380
Target Start/End: Complemental strand, 36160409 - 36160314
Alignment:
Q  285 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 380  Q
    |||||||||| ||||  | |||||| |||| |||| ||||| |||  ||| ||||||||||| ||||||||||| |||| | ||||||||||||||    
T  36160409 aagtatttatgaaaaatcgtgtaattaatatattgaaaatcaaaacatttgacttttttaaaaaataattgcttattttagaatgcttaaagagtg 36160314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 334
Target Start/End: Original strand, 42338033 - 42338072
Alignment:
Q  295 aaaaatacatgtaatcaatacattggaaatcgaaatgttt 334  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  42338033 aaaaatacatgtaatcaatgcattggaaatcgaaatgttt 42338072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 408
Target Start/End: Complemental strand, 28793417 - 28793306
Alignment:
Q  293 ataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcccgccccggag 392  Q
    ||||||||| ||||||| ||| ||| |||||||||||| ||| ||||||||| | ||| ||| ||| |||||| || |||||||||    ||| |||||     
T  28793417 ataaaaatatatgtaattaatgcatcggaaatcgaaatatttgacttttttataaaatcatttcttcttttggaatccttaaagag----cgcaccggaa 28793322  T
Q  393 acactcgttaacaaga 408  Q
     |||||||||||||||    
T  28793321 gcactcgttaacaaga 28793306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 380
Target Start/End: Original strand, 39382490 - 39382556
Alignment:
Q  314 acattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 380  Q
    |||||| ||||  |||| ||||||||||| |||||||||||| ||| ||||| ||||||||||||||    
T  39382490 acattgaaaataaaaatatttaactttttaaaagaataattgtttgatttggaatgcttaaagagtg 39382556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 299
Target Start/End: Original strand, 42337986 - 42338019
Alignment:
Q  266 tttaaggactataaatagcaagtatttataaaaa 299  Q
    ||||||||||||||||||||||||||||||||||    
T  42337986 tttaaggactataaatagcaagtatttataaaaa 42338019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 380
Target Start/End: Complemental strand, 141911 - 141867
Alignment:
Q  336 acttttttaaagaataattgcttgttttggtatgcttaaagagtg 380  Q
    ||||||| |||||||||||| || |||||||||||||||||||||    
T  141911 actttttaaaagaataattgtttattttggtatgcttaaagagtg 141867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 408
Target Start/End: Complemental strand, 967181 - 967074
Alignment:
Q  296 aaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcccgccccggagaca 395  Q
    ||||| |||||| ||||| |||||||||| ||| | ||| | ||||||||||||||||  | |  |||||||||||||||||||      | ||||||||    
T  967181 aaaattcatgtattcaatgcattggaaattgaactatttgaattttttaaagaataatatcctaatttggtatgcttaaagagt-----acgcggagaca 967087  T
Q  396 ctcgttaacaaga 408  Q
    |||||||||||||    
T  967086 ctcgttaacaaga 967074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 379
Target Start/End: Complemental strand, 2816258 - 2816174
Alignment:
Q  295 aaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagt 379  Q
    |||||| |||||||||| |   ||| |||| ||||| ||| | ||||||||||||||||||||| |||||  |||||||||||||    
T  2816258 aaaaatgcatgtaatcattgtcttgaaaattgaaatatttgatttttttaaagaataattgcttcttttgaaatgcttaaagagt 2816174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 363
Target Start/End: Original strand, 1354375 - 1354442
Alignment:
Q  296 aaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 363  Q
    |||||| || ||||||||| ||| ||||||||||| ||||||||||||| | ||||||| ||| ||||    
T  1354375 aaaatatatataatcaatatattagaaatcgaaatatttaacttttttataaaataatttcttttttt 1354442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 383
Target Start/End: Complemental strand, 3263818 - 3263739
Alignment:
Q  304 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 383  Q
    |||||||||| ||| |||||||||||| ||| ||||||||| | ||| ||| ||| |||||  || ||||||||||||||    
T  3263818 tgtaatcaatgcatcggaaatcgaaatctttgacttttttataaaatgatttcttcttttgaaattcttaaagagtgccc 3263739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 380
Target Start/End: Complemental strand, 3758266 - 3758195
Alignment:
Q  309 tcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 380  Q
    ||||| ||||| |||||||||| ||| |||||||||||||||||||| || ||||   ||| ||||||||||    
T  3758266 tcaatgcattgaaaatcgaaatatttgacttttttaaagaataattgattattttaaaatgtttaaagagtg 3758195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 354
Target Start/End: Complemental strand, 7211000 - 7210950
Alignment:
Q  304 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataatt 354  Q
    |||| |||||||||||||| | ||| |||||||||||||||| ||||||||    
T  7211000 tgtattcaatacattggaatttgaagtgtttaacttttttaacgaataatt 7210950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 380
Target Start/End: Complemental strand, 8247136 - 8247062
Alignment:
Q  306 taatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 380  Q
    |||||||| ||| |||||||||||| ||| ||||||||| | ||| ||| ||| |||||| || |||||||||||    
T  8247136 taatcaatgcatcggaaatcgaaatatttgacttttttataaaattatttcttcttttggaatccttaaagagtg 8247062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 383
Target Start/End: Complemental strand, 16161504 - 16161411
Alignment:
Q  290 tttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 383  Q
    ||||||||||||  |||| | ||| ||||| |||| ||| | |||||||||||| || ||||||| | |  ||||| |||||||||||||||||    
T  16161504 tttataaaaatatgtgtatttaatccattgaaaattgaattatttaactttttttaaaaataatttcctaatttggaatgcttaaagagtgccc 16161411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 14042532 - 14042484
Alignment:
Q  306 taatcaatacattggaaatcgaaatgtttaacttttttaaagaataatt 354  Q
    |||||||| ||||||||||| |||| ||| ||||||||||| |||||||    
T  14042532 taatcaatgcattggaaatcaaaatatttgacttttttaaataataatt 14042484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 355
Target Start/End: Complemental strand, 39099961 - 39099889
Alignment:
Q  285 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgttt-aacttttttaaa-gaataattg 355  Q
    |||||||||||||||||  |||| || || ||||| |||||||||| ||| |||||||||||| |||||||||    
T  39099961 aagtatttataaaaatatgtgtattcgatgcattgaaaatcgaaatatttgaacttttttaaaggaataattg 39099889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 266 - 380
Target Start/End: Complemental strand, 189178 - 189064
Alignment:
Q  266 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 365  Q
    ||||| ||| |||||||  |||||||||| ||||||  |||||| |||  ||| ||||| ||||| ||||||||||||||||||||||||||| ||||      
T  189178 tttaatgaccataaataataagtatttatgaaaatatgtgtaattaatgtattagaaatagaaatatttaacttttttaaagaataattgcttattttaa 189079  T
Q  366 tatgcttaaagagtg 380  Q
     ||||||||||||||    
T  189078 aatgcttaaagagtg 189064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 380
Target Start/End: Original strand, 11664 - 11775
Alignment:
Q  269 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtat 368  Q
    ||||| ||||| ||| || ||||||| |||| |  |||||||||  |||| ||||||||||  ||| |||||| |||| | ||||||||| |||||  ||    
T  11664 aaggattataagtagtaactatttatgaaaaaatgtgtaatcaaagcatttgaaatcgaaacatttgacttttctaaaaattaattgcttattttgaaat 11763  T
Q  369 gcttaaagagtg 380  Q
    ||||||||||||    
T  11764 gcttaaagagtg 11775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 363
Target Start/End: Complemental strand, 39004 - 38917
Alignment:
Q  276 ataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 363  Q
    |||||||| || |||||||||||||||||| |||||||   || |||||| | ||||||||| ||||||||  |||||| ||| ||||    
T  39004 ataaatagtaaatatttataaaaatacatgcaatcaatgtcttagaaatcaacatgtttaacatttttaaaagataattacttatttt 38917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 354
Target Start/End: Complemental strand, 219275 - 219211
Alignment:
Q  290 tttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataatt 354  Q
    |||||||||||| ||||| | ||| |||||||||| ||| | ||| |||||| ||||||||||||    
T  219275 tttataaaaatatatgtatttaatgcattggaaattgaactatttgacttttgtaaagaataatt 219211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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