View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2807_high_4 (Length: 428)
Name: NF2807_high_4
Description: NF2807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2807_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 6 - 418
Target Start/End: Complemental strand, 54646944 - 54646531
Alignment:
| Q |
6 |
atatacaactacaagttggttggcaaataacataactcatgcaaattccaccctctgttataattcacaatagaatattcgtgttagaactatataaggg |
105 |
Q |
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| T |
54646944 |
atatacaactacaagttggttggcaaataacataactcatgcaaactccaccctctgttataattcacaatagaatattcgtgttagaactatataaggg |
54646845 |
T |
|
| Q |
106 |
agaacaaagtacagctaaagtgatagaactacaggtttgaaaatttacctcagctttgtagtgtaatgcagttattcgattctcaatgcc-gctagctac |
204 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
54646844 |
agaacaaagtacaactaaagtgatagaactacaggtttgaaaatttacctcagctttgtagtgtaatgcagttattcgattctcaatgccagctagctac |
54646745 |
T |
|
| Q |
205 |
tattatatgtgccacaatacacgcccctcnnnnnnncccaaacaccaaaaccacatttgtgtggtgaaattcctagtcatgctagaatatatacggactc |
304 |
Q |
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| T |
54646744 |
tattatatgtgccacaatacacgcccctcaaaaaaacccaaacaccaaaaccacatttgtgtggtgaaattcctagtcatgctagaatatatacggactc |
54646645 |
T |
|
| Q |
305 |
ccaaagctaatttcgtctaataattacttatttgacattgccagttcggaccgttgtaggtaatatcctttctgattcacatttctttttatcattttct |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
54646644 |
ccaaagctaatttcgtctaataattacttatttgacattgccagttcggatcgttgtaggtaatatcctttccgattcacatttctttttatcactttct |
54646545 |
T |
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| Q |
405 |
gctgttttcttcat |
418 |
Q |
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|||||||||||||| |
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| T |
54646544 |
gctgttttcttcat |
54646531 |
T |
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