View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2807_high_5 (Length: 417)
Name: NF2807_high_5
Description: NF2807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2807_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 73 - 301
Target Start/End: Original strand, 20898384 - 20898612
Alignment:
| Q |
73 |
cggtgatatttgcagagggatatttccttagaaggaagataaactccaatcaagaggagattgagataccatctttaataagagatattcatggtgctcc |
172 |
Q |
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| T |
20898384 |
cggtgatatttgcagaggggtatttccttagaaggaagatcaactccaatcaagaggagattgagataccatctttaataagagatattcatggtgctcc |
20898483 |
T |
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| Q |
173 |
tcctgaaagccttgttgttaaactagctgaagtaatcgaaaacttgaagacccttcgagaaatggaaattttttggtgcagggttgttgctgaagtatgt |
272 |
Q |
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| T |
20898484 |
tcctgaaagccttgttgttaaactagctgaagtaatcggaaacttgaagacccttcgagaaatggaaattttttggtgcagggttattgctgaagtatgt |
20898583 |
T |
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| Q |
273 |
ttagctcaatatgaaatttcatgttttga |
301 |
Q |
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| T |
20898584 |
ttagctcaatatgaaatttcatgttttga |
20898612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 20898342 - 20898382
Alignment:
| Q |
14 |
atataattgactcaatgaaccattttatgctcatacatttt |
54 |
Q |
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| T |
20898342 |
atataattgcatcaatgaaccattttatgctcatacatttt |
20898382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 77 - 275
Target Start/End: Original strand, 40698993 - 40699191
Alignment:
| Q |
77 |
gatatttgcagagggatatttccttagaaggaagataaactccaatcaagaggagattgagataccatctttaataagagatattcatggtgctcctcct |
176 |
Q |
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| T |
40698993 |
gatattcgcagagggagatttccttagaaggaagatcaattccaacccagagggaaatgatatgacatctttgccaagagatattcacggtgctcctcct |
40699092 |
T |
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| Q |
177 |
gaaagccttgttgttaaactagctgaagtaatcgaaaacttgaagacccttcgagaaatggaaattttttggtgcagggttgttgctgaagtatgttta |
275 |
Q |
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| T |
40699093 |
gaaagtcttgttgtgaagttggctgaaattgttggaaactacaagaccgtacgaaaaatggctctgttctggtgcagggttgttgaagaagtatgttta |
40699191 |
T |
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