View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2807_high_6 (Length: 391)
Name: NF2807_high_6
Description: NF2807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2807_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 91 - 319
Target Start/End: Complemental strand, 20898612 - 20898384
Alignment:
| Q |
91 |
tcaaaacatgaaatttcatattgagctaaacatacttcagcaacaaccctgcaccaaaaaatttccatttctcgaagggtcttcaagttttcgattactt |
190 |
Q |
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| T |
20898612 |
tcaaaacatgaaatttcatattgagctaaacatacttcagcaataaccctgcaccaaaaaatttccatttctcgaagggtcttcaagtttccgattactt |
20898513 |
T |
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| Q |
191 |
cagctagtttaacaacaaggctttcaggaggagcaccatgaatatctcttattaaagatggtatctcaatctcctcttgattggagtttatcttccttct |
290 |
Q |
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| T |
20898512 |
cagctagtttaacaacaaggctttcaggaggagcaccatgaatatctcttattaaagatggtatctcaatctcctcttgattggagttgatcttccttct |
20898413 |
T |
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| Q |
291 |
aaggaaatatccctctgcaaatatcaccg |
319 |
Q |
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| T |
20898412 |
aaggaaatacccctctgcaaatatcaccg |
20898384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 378
Target Start/End: Complemental strand, 20898382 - 20898342
Alignment:
| Q |
338 |
aaaatgtatgagcataaaatggttcattgagtcaattatat |
378 |
Q |
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| T |
20898382 |
aaaatgtatgagcataaaatggttcattgatgcaattatat |
20898342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 117 - 315
Target Start/End: Complemental strand, 40699191 - 40698993
Alignment:
| Q |
117 |
taaacatacttcagcaacaaccctgcaccaaaaaatttccatttctcgaagggtcttcaagttttcgattacttcagctagtttaacaacaaggctttca |
216 |
Q |
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| T |
40699191 |
taaacatacttcttcaacaaccctgcaccagaacagagccatttttcgtacggtcttgtagtttccaacaatttcagccaacttcacaacaagactttca |
40699092 |
T |
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| Q |
217 |
ggaggagcaccatgaatatctcttattaaagatggtatctcaatctcctcttgattggagtttatcttccttctaaggaaatatccctctgcaaatatc |
315 |
Q |
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||||||||||| |||||||||||| ||||||| || ||| | ||||| | ||||| || ||||||||||||||||||| ||||||||| |||||| |
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| T |
40699091 |
ggaggagcaccgtgaatatctcttggcaaagatgtcatatcatttccctctgggttggaattgatcttccttctaaggaaatctccctctgcgaatatc |
40698993 |
T |
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