View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2807_high_7 (Length: 374)
Name: NF2807_high_7
Description: NF2807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2807_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 20898365 - 20897998
Alignment:
| Q |
1 |
aatggttcattgagtcaattatatcgttagca----agccgctcaaaatttgcatacctggattcaaaagataactaatcaaatacacaactttctcatt |
96 |
Q |
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| T |
20898365 |
aatggttcattgatgcaattatatcgtaagcatgcaagccgctcaaaatttgcatacctggattgaaaagagaactaatcaaatacacaaatttctcttt |
20898266 |
T |
|
| Q |
97 |
gctggtgaattcagaggtaagtttgacctccttctcttgtagcactaacgccttcactgcagagagactcaaccctaccttctctatggaagctgaagaa |
196 |
Q |
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| T |
20898265 |
gctggtgaattcagaggtaagtttgtcctccttctcacgtagcactaatgccttcactgcagagagacgcaaccctgccttctctatggaaggtgaagaa |
20898166 |
T |
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| Q |
197 |
cctcctgttaaagctgcaaaatctttcattgtatttgctttcataccagccttcgtcaaaaagacaaaattttgagattttaagctaaaaatcttttaga |
296 |
Q |
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| T |
20898165 |
ccttctgttgaagctgcaaaatttttcattgaatttgctttcataccagccctagtcaaaaagacaaaattttgagattttaagctaaaaatctttcaga |
20898066 |
T |
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| Q |
297 |
atagcacgaacaagacttgtaaacatttgtgctactaatgttttattcaggattcgaacacaggttct |
364 |
Q |
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| T |
20898065 |
atagcccgaacaagactagtaaacatttgtgctattattgttttattcaggattcgaacataggttct |
20897998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 49 - 225
Target Start/End: Complemental strand, 40698874 - 40698698
Alignment:
| Q |
49 |
catacctggattcaaaagataactaatcaaatacacaactttctcattgctggtgaattcagaggtaagtttgacctccttctcttgtagcactaacgcc |
148 |
Q |
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| T |
40698874 |
catacctggatcaaaaagagaattgatcaaatgcacaactttctcattgctactaaactcagaggtaagtttatcctccttctctcgcaacactaaagcc |
40698775 |
T |
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| Q |
149 |
ttcactgcagagagactcaaccctaccttctctatggaagctgaagaacctcctgttaaagctgcaaaatctttcat |
225 |
Q |
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|| |||||||||||||| || ||| || |||| ||| || |||||||||||||| | ||||| || ||||||||| |
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| T |
40698774 |
ttgactgcagagagacttaagcctcccctctccttggcaggtgaagaacctcctgatgaagctataacatctttcat |
40698698 |
T |
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