View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2807_low_1 (Length: 634)
Name: NF2807_low_1
Description: NF2807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2807_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 40296422 - 40296113
Alignment:
| Q |
18 |
ccttcttgatgtatccttttggtaagcccagattctcatccatcacttctgtgagactcactgccagtttctttaactcagaccgatattctgatatggt |
117 |
Q |
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| T |
40296422 |
ccttcttgatgtatccttttggtaagcccagattctcatccatcacttctgtgagactcactgccagtttctttaactcagaccgatattctgacatggt |
40296323 |
T |
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| Q |
118 |
ttccctgtcattcacatgagaagtcagttatacattcatgttgaaactctacctattatgctatgtcatgtcatgttctcacttagcatgttttgaagtg |
217 |
Q |
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| T |
40296322 |
ttccctgtcattcacatgagaagtcagttatacattcatgttgaaactctacctattatgccatgtcatgtcatgttctcacttagcatgttttgaagtg |
40296223 |
T |
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| Q |
218 |
ctgtccttgaatcctaa-aaaagtatattggtttcaactcttcaaaactttccaattttagatgttattttgaaatcacctattttagtaaacaagagta |
316 |
Q |
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| T |
40296222 |
ctgtccttgaatcctaaaaaaagtatattggtttcaactcttcaaaactttccaattttagatgttattttgaaatcacctattttagtaaacaagagta |
40296123 |
T |
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| Q |
317 |
agagaacttg |
326 |
Q |
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| T |
40296122 |
agagaacttg |
40296113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 412 - 621
Target Start/End: Complemental strand, 40296016 - 40295807
Alignment:
| Q |
412 |
gagtaagtataatgtataacagaagagagtatgcatgagatgacaggtggtgttctttctgatatcaatatgcttgactaacttttacttggaaagaaca |
511 |
Q |
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| T |
40296016 |
gagtaagtataatgtataacagaagagagtatgcatgagatgacaggtggtgttctttctgatatcaatatgcttgactaacttttacttggaaagaaca |
40295917 |
T |
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| Q |
512 |
tttgatttgctttgtacctgaaacttggtgtattttctggccattcgttatcatccaagagagtgataacatcctcccagtccacattctccaatttctc |
611 |
Q |
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| T |
40295916 |
tttgatttgctttgtacctgaaacttggtgtattttctggccattcgttatcatccaagagagtgataacatcctcccagtccacattctccaatttctc |
40295817 |
T |
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| Q |
612 |
actgctcttc |
621 |
Q |
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| T |
40295816 |
actgctcttc |
40295807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 418
Target Start/End: Complemental strand, 40296050 - 40296021
Alignment:
| Q |
389 |
acaagaaataaattcttcctggtgagtaag |
418 |
Q |
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| T |
40296050 |
acaagaaataaattcttcctggtgagtaag |
40296021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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