View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2807_low_10 (Length: 359)
Name: NF2807_low_10
Description: NF2807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2807_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 9e-95; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 26 - 346
Target Start/End: Original strand, 31068727 - 31069052
Alignment:
| Q |
26 |
tcatatttacttgtgtcaaactagctacttggtttggaaacatatatatggtagcaaattataatcttgtaacaggtgctactttttatttatgatgaaa |
125 |
Q |
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| T |
31068727 |
tcatatttacttgtgtcaaactactttgtttgtttc---acatatatgtcgtagctaattataatcttgtaacaggtgctacttctt-tttatgatgaaa |
31068822 |
T |
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| Q |
126 |
atgaagctttaaaacgaaatataaaccatt---gtaatgt---attaa----gtatatttttacaattgttgcaaacttcataagaaaataataatgatg |
215 |
Q |
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| T |
31068823 |
atgaagctttaaaacgaaatattaaccattattgtaatgttgtattaaaatagtatatttttacaattgttgcaaacttcataagaaaaaaa-agtgatg |
31068921 |
T |
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| Q |
216 |
aacacaggtagatatcttactgaggacaaagagagaagctatccatacaccagttttagtacgaagaggaacttttcctttacaatccacagaaccatca |
315 |
Q |
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| T |
31068922 |
aactaaagtagatatcttacttaggacaaagagagaagctatccatacaccagttttagcacgaaggggaactttgcctttacaatccacagaaccatca |
31069021 |
T |
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| Q |
316 |
taaacccatttctcatgctccctttcttctc |
346 |
Q |
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| T |
31069022 |
taaacccatttctcatgctccctttcttctc |
31069052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 184 - 346
Target Start/End: Original strand, 31085583 - 31085743
Alignment:
| Q |
184 |
gttgcaaacttcataagaaaataataatgatgaacacaggtagatatcttactgaggacaaagagagaagctatccatacaccagttttagtacgaagag |
283 |
Q |
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| T |
31085583 |
gttgcaaactttataagaaaaaaa--atgatgaacacaggtagatatcttactgaggacaaagagagaagctatccatacaccagttttagcacgaagag |
31085680 |
T |
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| Q |
284 |
gaacttttcctttacaatccacagaaccatcataaacccatttctcatgctccctttcttctc |
346 |
Q |
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| T |
31085681 |
gaacttttcctttacaatccacagaaccatcataaacccatttctcttgttcactttcttctc |
31085743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 228 - 326
Target Start/End: Original strand, 31059520 - 31059618
Alignment:
| Q |
228 |
tatcttactgaggacaaagagagaagctatccatacaccagttttagtacgaagaggaacttttcctttacaatccacagaaccatcataaacccattt |
326 |
Q |
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| T |
31059520 |
tatcttactgatgacaaagaaagaagctttccatgcaccagtggaagcacgaagaggaactcttcctttataatcaaaagaaccatcatacacccattt |
31059618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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