View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2807_low_2 (Length: 518)
Name: NF2807_low_2
Description: NF2807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2807_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 460; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 15 - 510
Target Start/End: Complemental strand, 37298719 - 37298224
Alignment:
| Q |
15 |
tcagaaggattatagtgagttgggcaagggaaaccatttgaagcaaaaaactgcattgaatcaagtgttactatatatgtaatttgccaacttgaaatca |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37298719 |
tcagaaggattatagtgagttgggcaagggaaaccatttgaagcaaaaacctgcattgaatcaagtgttactatatgtgtaatttgccaacttgaaatca |
37298620 |
T |
|
| Q |
115 |
atatgtacaaggattctaattcctaacctgatttgcttcagatgctgtaccaaaatataccgtctccccagaggaaagaagacagaggtcatcaaaaagt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37298619 |
atatgtacaaggattctaattcctaacctgatttgcttcagatgctgtaccaaaatataccgtctccccagaggaaagaagacagaggtcatcaaaaagt |
37298520 |
T |
|
| Q |
215 |
tgaaaaacttcactactaggctgatgtatggatgcaacaattgtcctttgaatatcatcccttagacttaaacttgcaatcctgctcataacgtagtagg |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
37298519 |
tgaaaaacttcactactaggctgatgtatggatgcaacaattgtcctttgaatatcatcccttagacttaaacttgcgatcctgctcataacatagtagg |
37298420 |
T |
|
| Q |
315 |
aagcagcactatcaagtccactagttggttcatcaaggaaaagaagtctagggtgtgttagaatctcaatgcaaatgcttagtctccttctttgcccccc |
414 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37298419 |
aagctgcactatcaagtccactagttggttcatcaaggaaaagaagtctagggtgagttagaatctcaatgcaaatgcttagtctccttctttgcccccc |
37298320 |
T |
|
| Q |
415 |
gcttaggcctttagaaccataccctccaacccttgtgttaatagcatcttgcaggcccatttctgcgagtgtgatgtctgcttgcctcttcatctc |
510 |
Q |
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| T |
37298319 |
gcttaggcctttggaaccataccctccaacccttgtgttaatagcatcctgcaggcccatttctgcgagtgtgatgtctgcttgcctcttcttctc |
37298224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 134 - 455
Target Start/End: Complemental strand, 37291482 - 37291161
Alignment:
| Q |
134 |
ttcctaacctgatttgcttcagatgctgtaccaaaatataccgtctccccagaggaaagaagacagaggtcatcaaaaagttgaaaaacttcactactag |
233 |
Q |
| |
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||||||||||||||||| ||| | |||| ||||||||| || | || ||||| || |||||||| ||||||| |||||||| ||||| |||||| |||| |
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| T |
37291482 |
ttcctaacctgatttgcatcataggctggaccaaaatagacagcttcaccagaagacagaagacaaaggtcatgaaaaagttcaaaaagttcactgctag |
37291383 |
T |
|
| Q |
234 |
gctgatgtatggatgcaacaattgtcctttgaatatcatcccttagacttaaacttgcaatcctgctcataacgtagtaggaagcagcactatcaagtcc |
333 |
Q |
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| ||||| |||||| ||||||| ||||||||||| | ||||||| | | |||| |||||| | |||||||| ||||||||||| |||||||||||||| |
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| T |
37291382 |
gttgatggatggatacaacaatagtcctttgaattccgtcccttaaattcaaacgtgcaattccactcataacatagtaggaagctgcactatcaagtcc |
37291283 |
T |
|
| Q |
334 |
actagttggttcatcaaggaaaagaagtctagggtgtgttagaatctcaatgcaaatgcttagtctccttctttgccccccgcttaggcctttagaacca |
433 |
Q |
| |
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||||| |||||||||||||| |||||||| ||| | ||||||||||| ||||||||||| ||||| || ||||| || || ||||| ||||||||||| |
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| T |
37291282 |
gctagtcggttcatcaaggaagagaagtctcgggcgcgttagaatctcgatgcaaatgctaagtcttctcctttgtcctccacttagacctttagaaccc |
37291183 |
T |
|
| Q |
434 |
taccctccaacccttgtgttaa |
455 |
Q |
| |
|
| ||||||||||||||||||| |
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| T |
37291182 |
catcctccaacccttgtgttaa |
37291161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 191 - 478
Target Start/End: Complemental strand, 37330860 - 37330573
Alignment:
| Q |
191 |
agaagacagaggtcatcaaaaagttgaaaaacttcactactaggctgatgtatggatgcaacaattgtcctttgaatatcatcccttagacttaaacttg |
290 |
Q |
| |
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|||||||| |||| || ||| ||||||||||||||| ||||||| ||||| ||||||| || ||||||||||||||| ||||| || || | |
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| T |
37330860 |
agaagacaaaggttatgaaagagttgaaaaacttcagtactaggttgatggatggatgtaataattgtcctttgaattccatcctttttgtccaaggaag |
37330761 |
T |
|
| Q |
291 |
caatcctgctcataacgtagtaggaagcagcactatcaagtccactagttggttcatcaaggaaaagaagtctagggtgtgttagaatctcaatgcaaat |
390 |
Q |
| |
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|||| || ||||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||| |||||||||||||| |
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| T |
37330760 |
caattcttttcataacatagtaagaagcagcactatcaagtccactagttggctcatcaagaaaaagaagtctaggacgtgttaggatctcaatgcaaat |
37330661 |
T |
|
| Q |
391 |
gcttagtctccttctttgccccccgcttaggcctttagaaccataccctccaacccttgtgttaatagcatcttgcaggcccatttct |
478 |
Q |
| |
|
||| | ||||||| |||| ||||| |||| |||||| ||| ||||||||| |||||||| || ||||||||||| ||||||||| |
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| T |
37330660 |
gctaactctccttttttgacccccacttatgcctttcacaccccaccctccaattcttgtgttcattgcatcttgcagacccatttct |
37330573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 191 - 478
Target Start/End: Complemental strand, 37321938 - 37321651
Alignment:
| Q |
191 |
agaagacagaggtcatcaaaaagttgaaaaacttcactactaggctgatgtatggatgcaacaattgtcctttgaatatcatcccttagacttaaacttg |
290 |
Q |
| |
|
|||||||| |||| || ||||||||||||||||||| ||||||| ||||| ||||||| || ||| ||||| |||| |||| | || ||| | | |
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|
| T |
37321938 |
agaagacataggttatgaaaaagttgaaaaacttcagtactaggttgatggatggatgtaataatagtcctccgaattccatctttatgatccaaagtag |
37321839 |
T |
|
| Q |
291 |
caatcctgctcataacgtagtaggaagcagcactatcaagtccactagttggttcatcaaggaaaagaagtctagggtgtgttagaatctcaatgcaaat |
390 |
Q |
| |
|
|||| || ||||||| ||||| ||||||||||||||||||||||||||||| |||||||| || ||||||||||| ||||||| |||||||||||||| |
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| T |
37321838 |
caattcttttcataacatagtaagaagcagcactatcaagtccactagttggctcatcaagaaatagaagtctaggacgtgttaggatctcaatgcaaat |
37321739 |
T |
|
| Q |
391 |
gcttagtctccttctttgccccccgcttaggcctttagaaccataccctccaacccttgtgttaatagcatcttgcaggcccatttct |
478 |
Q |
| |
|
||| | ||||||| |||| ||||| |||| |||||| ||| ||||||||| |||||||| || ||||||||||| ||||||||| |
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| T |
37321738 |
gctaactctccttttttgacccccacttatgcctttcacaccccaccctccaattcttgtgttcattgcatcttgcagacccatttct |
37321651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 300 - 478
Target Start/End: Original strand, 37346854 - 37347032
Alignment:
| Q |
300 |
tcataacgtagtaggaagcagcactatcaagtccactagttggttcatcaaggaaaagaagtctagggtgtgttagaatctcaatgcaaatgcttagtct |
399 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||| || |||||||| || |||| |||||||||||| ||||||| | ||| |
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|
| T |
37346854 |
tcataacatagtaagaagcagcactatcaagtccactagttggttcatcaagaaatagaagtcttggacgtgtaagaatctcaatggaaatgctaactct |
37346953 |
T |
|
| Q |
400 |
ccttctttgccccccgcttaggcctttagaaccataccctccaacccttgtgttaatagcatcttgcaggcccatttct |
478 |
Q |
| |
|
|||| |||| ||||| |||| |||||| ||| ||||||| | |||||||| || ||||||||||| ||||||||| |
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|
| T |
37346954 |
ccttttttgacccccacttattcctttaacaccccaccctcctattcttgtgttgattgcatcttgcagacccatttct |
37347032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 300 - 478
Target Start/End: Original strand, 19544689 - 19544867
Alignment:
| Q |
300 |
tcataacgtagtaggaagcagcactatcaagtccactagttggttcatcaaggaaaagaagtctagggtgtgttagaatctcaatgcaaatgcttagtct |
399 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| | || |||| || ||||||||||||||||| | ||| |
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|
| T |
19544689 |
tcataacatagtaagaagcagcactatcaagtccacttgttggttcatcaagaaaaagaagttttggacgtgtaaggatctcaatgcaaatgctaactct |
19544788 |
T |
|
| Q |
400 |
ccttctttgccccccgcttaggcctttagaaccataccctccaacccttgtgttaatagcatcttgcaggcccatttct |
478 |
Q |
| |
|
|||| | || || || |||| ||||||| ||| | ||||||| |||||||| ||||||||||||| ||||||||| |
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|
| T |
19544789 |
ccttttctgacctccacttatgcctttaacaccccatcctccaattattgtgttagtagcatcttgcagacccatttct |
19544867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 37291711 - 37291644
Alignment:
| Q |
15 |
tcagaaggattatagtgagttgggcaagggaaaccatttgaagcaaaaaactgcattgaatcaagtgt |
82 |
Q |
| |
|
||||||||||| | | ||||||| ||||| |||||||||| ||||||||||||||| ||||||||||| |
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|
| T |
37291711 |
tcagaaggattgtggagagttggacaaggaaaaccatttgcagcaaaaaactgcatcgaatcaagtgt |
37291644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 37346763 - 37346821
Alignment:
| Q |
209 |
aaaagttgaaaaacttcactactaggctgatgtatggatgcaacaattgtcctttgaat |
267 |
Q |
| |
|
|||||||||||||||||| |||| || ||||| || || |||||||| ||||||||||| |
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|
| T |
37346763 |
aaaagttgaaaaacttcagtacttggttgatggattgaggcaacaatggtcctttgaat |
37346821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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