View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2807_low_26 (Length: 238)
Name: NF2807_low_26
Description: NF2807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2807_low_26 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 34253776 - 34253556
Alignment:
| Q |
18 |
tgtcctaccaacatccttgttaactgtaatataaccagaatagtgttcaaagttgatgttgaagttttgacctgggagtgctgttccaatcctgtcttgc |
117 |
Q |
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| T |
34253776 |
tgtcctaccaacatccttgttaactgtaatataaccagaatagtgttcaaagttgatgttgaagttttgacctgggagtgctgttccaatcctgtcttgc |
34253677 |
T |
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| Q |
118 |
tcttgttggtggtcagttgtaaaggctaatatgatgttgcataggaaaagggctgccaatgttatgatgtctttgaacaaaatttgagaccacttagaat |
217 |
Q |
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| T |
34253676 |
tcttgttggtggtcagttgtaaaggctaatatgatgttgcataggaaaagggctgccaatgttatgatgtctttgaacaaaatttgagaccacttagaat |
34253577 |
T |
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| Q |
218 |
tcaccattttagattgtagat |
238 |
Q |
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| T |
34253576 |
tcaccattttagattgtagat |
34253556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 26633746 - 26633640
Alignment:
| Q |
20 |
tcctaccaacatccttgttaactgtaatataaccagaatagtgttcaaagttgatgttgaagttttgacctgggagtgctgttccaatcctgtcttgctc |
119 |
Q |
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|||||||| |||||| || ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| | | |||||||||| || || |
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| T |
26633746 |
tcctaccagcatcctcattcactgttatataaccagaatagtgttcaaagctgatgttgaagttttgacctgggagtggtctatcaatcctgtcatgttc |
26633647 |
T |
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| Q |
120 |
ttgttgg |
126 |
Q |
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| T |
26633646 |
ttgttgg |
26633640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 26626185 - 26626079
Alignment:
| Q |
20 |
tcctaccaacatccttgttaactgtaatataaccagaatagtgttcaaagttgatgttgaagttttgacctgggagtgctgttccaatcctgtcttgctc |
119 |
Q |
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| T |
26626185 |
tcctaccagcatcctcattcactgttatataaccagagtaatgttcaaagctgatgttgaagttttgacctgggagtggtctatcaatcctgtcttgttc |
26626086 |
T |
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| Q |
120 |
ttgttgg |
126 |
Q |
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| T |
26626085 |
ttgttgg |
26626079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 26641211 - 26641132
Alignment:
| Q |
20 |
tcctaccaacatccttgttaactgtaatataaccagaatagtgttcaaagttgatgttgaagttttgacctgggagtgct |
99 |
Q |
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| T |
26641211 |
tcctaccaacatcctcattcactgttatataaccagagtaatgttcaaagctgatgttgaagttttgacctggaagtgct |
26641132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 151 - 238
Target Start/End: Complemental strand, 26641086 - 26640999
Alignment:
| Q |
151 |
atgttgcataggaaaagggctgccaatgttatgatgtctttgaacaaaatttgagaccacttagaattcaccattttagattgtagat |
238 |
Q |
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| T |
26641086 |
atgttacattggaaaaggtttgccaatgttatgatgacaatgaacaaaatttgagaccacttagaattggccatttcagatggtagat |
26640999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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