View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2808_high_15 (Length: 229)
Name: NF2808_high_15
Description: NF2808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2808_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 21 - 214
Target Start/End: Original strand, 29613133 - 29613326
Alignment:
| Q |
21 |
taagccatattataagaaaaattaatattctgaaagtgactttccgaatttgacccaatataataaaattcattatgatcatatttttgtaacaacttca |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29613133 |
taagccatattataagaaaaattaatattctgaaagtgactttccgaatttgacccaatataataaaatccattatgatcatatttttgtaacaacttca |
29613232 |
T |
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| Q |
121 |
ccaaattttcagtcacaaaaaatgtgtcatcatcccccatcacaaaccacctcacattctccaaccttaaccttactgtctccgacacaatcct |
214 |
Q |
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| T |
29613233 |
ccaaattctcagtcacaaaaaatgtgtcatcatcccccatcacaaaccacctcacattctccaaccttaaccttactgtctccgacacaatcct |
29613326 |
T |
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Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 21 - 183
Target Start/End: Complemental strand, 11092085 - 11091923
Alignment:
| Q |
21 |
taagccatattataagaaaaattaatattctgaaagtgactttccgaatttgacccaatataataaaattcattatgatcatatttttgtaacaacttca |
120 |
Q |
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|||||||||||||||||||||| ||||||||| || ||||| || ||||| ||||| |||||||||| ||||||||||||||| | || | || | |
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| T |
11092085 |
taagccatattataagaaaaataaatattctgcaaatgactctctgaattactaccaatgtaataaaattgattatgatcatatttcttcaaaacattaa |
11091986 |
T |
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| Q |
121 |
ccaaattttcagtcacaaaaaatgtgtcatcatcccccatcacaaaccacctcacattctcca |
183 |
Q |
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||||||| |||| ||||||||||| |||||||| ||||||||||||||||||||||| |||| |
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| T |
11091985 |
ccaaattctcagcaacaaaaaatgtatcatcatcacccatcacaaaccacctcacattttcca |
11091923 |
T |
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