View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2808_high_17 (Length: 219)
Name: NF2808_high_17
Description: NF2808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2808_high_17 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 37158918 - 37159131
Alignment:
| Q |
1 |
accttctctttcggtccaaacctataacaacattataacaatttactaattagaaaaccgaagtttttgtgcatttaataaattatgtagtcgtgtatat |
100 |
Q |
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| T |
37158918 |
accttctctttcggtccaaacctataacaacattataacaatttactaattagaaaaccaaagtttttgtgcatttaataaattatgtagtcgtgtatat |
37159017 |
T |
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| Q |
101 |
catatatgtgctaggtttaaaatgcagttgataaggtgtacacaatatatgttcaccttgttatattgagatatcattccacaaagaggtattctagcat |
200 |
Q |
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| T |
37159018 |
-----atgtgctaggtttaaaatgcagttgataaggtgtacacaatatatgttcaccttgttatattgagatatcattccacaaagaggtattctagcat |
37159112 |
T |
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| Q |
201 |
gcttgttgacgtggttaag |
219 |
Q |
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| T |
37159113 |
gcttgttgacatggttaag |
37159131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 2 - 219
Target Start/End: Original strand, 37152727 - 37152935
Alignment:
| Q |
2 |
ccttctctttcggtccaaacctataacaacattataacaatttactaattagaaaaccgaagtttttgtgcatttaataaattatgtagtcgtgtatatc |
101 |
Q |
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| T |
37152727 |
ccttctctttctgtccaaacctataccaacattataactat-----aattagaaaatcaaagcttt-gtgcatttgataaattattgagtcat------- |
37152813 |
T |
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| Q |
102 |
atatatgtgctaggtttaaaatgcagttgataaggtgtacacaatata----tgttcaccttgttatattgagatatcattccacaaagaggtattctag |
197 |
Q |
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| T |
37152814 |
atatatgtgctatgtttaaaatgcatttgatgaagtgtaccctatataaccgtgtccacctgattatattgagatatcattccacaaagaggtattctag |
37152913 |
T |
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| Q |
198 |
catgcttgttgacgtggttaag |
219 |
Q |
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| T |
37152914 |
catacttgttgacatggttaag |
37152935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 37146693 - 37146767
Alignment:
| Q |
2 |
ccttctctttcggtccaaacctataacaacattataacaatttactaattagaaaaccgaagtttttgtgcattt |
76 |
Q |
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| T |
37146693 |
ccttctctttcggtccaaacctataccaacattataacaatttactaattagaaaattgaaatttttgggcattt |
37146767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 152 - 219
Target Start/End: Original strand, 37146802 - 37146869
Alignment:
| Q |
152 |
ttcaccttgttatattgagatatcattccacaaagaggtattctagcatgcttgttgacgtggttaag |
219 |
Q |
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| T |
37146802 |
ttcaccttattatattgagatatcatcccacaaagaggtattctagcatttttgttcacatggttaag |
37146869 |
T |
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