View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2808_high_3 (Length: 449)
Name: NF2808_high_3
Description: NF2808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2808_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 12 - 431
Target Start/End: Original strand, 45708866 - 45709292
Alignment:
| Q |
12 |
atcatcatttcccacccattgatagtcatactgcaaaaccaattaaataaattcagtacattagtcaccaaacttgtaaattaaacttnnnnnnnnn--- |
108 |
Q |
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| T |
45708866 |
atcatcatttcccacccattgatagtcatactgcaaaaccaattaaataaattcagtacattagtcaccaaacttgtaaattaaacttaaaaaaaaaaaa |
45708965 |
T |
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| Q |
109 |
--caaagagtactccatccttaaatataagagcacattgattaaattttattgttgatgtaattaaaataactaggagtactctttcnnnnnnnn--tat |
204 |
Q |
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| T |
45708966 |
aacaaagagtactccatccttaaatataagagcacattgattaaattttattgttgatgtaattaaaataactaggagtactctttcaaaaaaaagatat |
45709065 |
T |
|
| Q |
205 |
taataactaggagtagtattttaataaagaaataactgattaaatttnnnnnnnnnnttataggaagaggaggcacagaatacttaccatacagacaagg |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45709066 |
taataactaggagtagtattttaataaagaaataactgattaaatttaaaagaaattttataggaagaggaggcacagaatacttaccatacagacaagg |
45709165 |
T |
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| Q |
305 |
catcaacagcaacagtcgcattctccaactggccagtcataagtagcagtatcctgtaataccagttctctaaactgcacaaatcactaacataagtagg |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45709166 |
catcaacagcaacagtcgcattctccaactggccagtcataagtagcagtatcctgtaataccagttctctaaactgcacaaatcactaacataagtagg |
45709265 |
T |
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| Q |
405 |
agtatattacttgcacaccaaggtttt |
431 |
Q |
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||||||||||||||||||||||||||| |
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| T |
45709266 |
agtatattacttgcacaccaaggtttt |
45709292 |
T |
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