View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2808_high_6 (Length: 373)

Name: NF2808_high_6
Description: NF2808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2808_high_6
NF2808_high_6
[»] chr7 (1 HSPs)
chr7 (1-357)||(37188673-37189024)
[»] chr4 (10 HSPs)
chr4 (184-356)||(53499217-53499389)
chr4 (136-356)||(53492875-53493097)
chr4 (189-353)||(53495316-53495480)
chr4 (196-317)||(52590974-52591095)
chr4 (4-77)||(53492736-53492809)
chr4 (211-342)||(53488672-53488803)
chr4 (243-342)||(53502398-53502497)
chr4 (4-78)||(53499041-53499115)
chr4 (7-76)||(53495086-53495155)
chr4 (1-59)||(53502176-53502234)
[»] chr3 (2 HSPs)
chr3 (235-347)||(38214054-38214166)
chr3 (235-347)||(38218273-38218385)
[»] chr8 (3 HSPs)
chr8 (243-347)||(35018035-35018139)
chr8 (264-347)||(42991368-42991451)
chr8 (292-328)||(33811103-33811139)
[»] chr2 (2 HSPs)
chr2 (193-353)||(16942593-16942753)
chr2 (193-353)||(17013258-17013418)
[»] chr6 (2 HSPs)
chr6 (292-342)||(33450458-33450508)
chr6 (262-323)||(10379795-10379856)
[»] chr1 (1 HSPs)
chr1 (292-328)||(47495938-47495974)


Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 37188673 - 37189024
Alignment:
Q  1 ttctacctatggtttgacccaactgcagattttcacacttattccatcctctggaacccacaacgaattgtgtaagtattaacttaattccttaaaataa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||    
T  37188673 ttctacctatggtttgacccaactgcagattttcacacttattccatcctctggaacccacaacgaattgtgtaagtactaaactaattccttaaaataa 37188772  T
Q  101 ttaaataaacaaaaattgnnnnnnnnnnnnnngcaattacttgtgttggaagtaactaaataagtctaataaattgtgtttattttttcagtttctctgt 200  Q
    ||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37188773 ttaaataaacaaaaattgttttttttt-----gcaattacttgtgttggaagtaactaaataagtctaataaattctgtttattttttcagtttctctgt 37188867  T
Q  201 ggatggaactccaattagggaattcaaaaacatggaatcaaatggtgttccattccccaaaagccaaccaatgagaatctattctagtctttggaatgct 300  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37188868 ggatggaagtccaattagggaattcaaaaacatggaatcaaatggtgttccattccccaaaagccaaccaatgagaatctattctagtctttggaatgct 37188967  T
Q  301 gatgattgggccacaagaggtggacttgttaagacagattggtccaatgctcctttt 357  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  37188968 gatgattgggctacaagaggtggacttgttaagacagattggtccaatgctcctttt 37189024  T

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Target: chr4 (Bit Score: 125; Significance: 3e-64; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 184 - 356
Target Start/End: Original strand, 53499217 - 53499389
Alignment:
Q  184 tttttcagtttctctgtggatggaactccaattagggaattcaaaaacatggaatcaaatggtgttccattccccaaaagccaaccaatgagaatctatt 283  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||| || || |    
T  53499217 tttttcagtttctctgtagatggaactccaattagggaattcaagaacatggaatcaaatggtgtaccattccccaaaaaccaaccaatgaggatatact 53499316  T
Q  284 ctagtctttggaatgctgatgattgggccacaagaggtggacttgttaagacagattggtccaatgctccttt 356  Q
    | ||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||    
T  53499317 caagtctctggaatgctgatgattgggcaacaagaggaggacttgttaagacagattggtccaaagctccttt 53499389  T

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Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 136 - 356
Target Start/End: Original strand, 53492875 - 53493097
Alignment:
Q  136 attacttgtgttggaagtaactaaataagtctaataaat-tgtgtttattt-tttcagtttctctgtggatggaactccaattagggaattcaaaaacat 233  Q
    ||||||||||||||||| |||||||| || ||| |   | ||||| ||||| ||||||||||||||||||||||||||||||||| |||||||| |||||    
T  53492875 attacttgtgttggaagaaactaaattagactattctctctgtgtatatttatttcagtttctctgtggatggaactccaattagagaattcaagaacat 53492974  T
Q  234 ggaatcaaatggtgttccattccccaaaagccaaccaatgagaatctattctagtctttggaatgctgatgattgggccacaagaggtggacttgttaag 333  Q
     ||||||| ||| |||||||||||||||| |||||||||||| || || || ||||| |||||||||||||||||||| |||||||| ||||||||||||    
T  53492975 tgaatcaagtggcgttccattccccaaaaaccaaccaatgaggatatactcaagtctctggaatgctgatgattgggcaacaagaggaggacttgttaag 53493074  T
Q  334 acagattggtccaatgctccttt 356  Q
    |||||||||||||| ||||||||    
T  53493075 acagattggtccaaagctccttt 53493097  T

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Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 189 - 353
Target Start/End: Original strand, 53495316 - 53495480
Alignment:
Q  189 cagtttctctgtggatggaactccaattagggaattcaaaaacatggaatcaaatggtgttccattccccaaaagccaaccaatgagaatctattctagt 288  Q
    |||||| |||||||||||||| ||||| || |||||||| |||||||||||||| || ||| |||| || || |  ||||||||||| || ||||| |||    
T  53495316 cagtttttctgtggatggaacaccaataagagaattcaagaacatggaatcaaaaggagttgcatttccaaagaatcaaccaatgaggatatattcaagt 53495415  T
Q  289 ctttggaatgctgatgattgggccacaagaggtggacttgttaagacagattggtccaatgctcc 353  Q
    || |||||||||||||||||||| ||||||||||| ||||| |||||||||||| | ||||||||    
T  53495416 ctatggaatgctgatgattgggcaacaagaggtggtcttgtcaagacagattggacaaatgctcc 53495480  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 196 - 317
Target Start/End: Original strand, 52590974 - 52591095
Alignment:
Q  196 tctgtggatggaactccaattagggaattcaaaaacatggaatcaaatggtgttccattccccaaaagccaaccaatgagaatctattctagtctttgga 295  Q
    ||||||||||| |||||| | ||||||||||| ||  |||||||||| ||| |||| || || ||||||||| ||||||| || ||||| |||||||||     
T  52590974 tctgtggatgggactccattaagggaattcaagaatttggaatcaaaaggtattccttttcctaaaagccaagcaatgagtatatattcaagtctttggg 52591073  T
Q  296 atgctgatgattgggccacaag 317  Q
    |||| ||| |||||||||||||    
T  52591074 atgcagataattgggccacaag 52591095  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 53492736 - 53492809
Alignment:
Q  4 tacctatggtttgacccaactgcagattttcacacttattccatcctctggaacccacaacgaattgtgtaagt 77  Q
    ||||| ||||||||||||||||||||||||||||| || || || || ||||| |||||||| |||||||||||    
T  53492736 tacctttggtttgacccaactgcagattttcacacatactcaattctatggaatccacaacgtattgtgtaagt 53492809  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 342
Target Start/End: Complemental strand, 53488803 - 53488672
Alignment:
Q  211 ccaattagggaattcaaaaacatggaatcaaatggtgttccattccccaaaagccaaccaatgagaatctattctagtctttggaatgctgatgattggg 310  Q
    ||||||||||||||||||||| ||||     | ||||||||||  || || |  || ||||||||| | ||||| ||||| |||||||| ||||||||||    
T  53488803 ccaattagggaattcaaaaacttggagagtgaaggtgttccatatccaaagaagcagccaatgagattatattcaagtctatggaatgccgatgattggg 53488704  T
Q  311 ccacaagaggtggacttgttaagacagattgg 342  Q
    | ||||||||||| ||||| || |||||||||    
T  53488703 caacaagaggtggtcttgtgaaaacagattgg 53488672  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 342
Target Start/End: Original strand, 53502398 - 53502497
Alignment:
Q  243 tggtgttccattccccaaaagccaaccaatgagaatctattctagtctttggaatgctgatgattgggccacaagaggtggacttgttaagacagattgg 342  Q
    |||||| || ||||| || | ||||||||||||||| ||||| ||| | |||||||| ||| | ||||| |||||||||||||| || ||||||||||||    
T  53502398 tggtgtgcccttcccaaagaaccaaccaatgagaatatattcaagtttgtggaatgcagataactgggcaacaagaggtggactagtcaagacagattgg 53502497  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 53499041 - 53499115
Alignment:
Q  4 tacctatggtttgacccaactgcagattttcacacttattccatcctctggaacccacaacgaattgtgtaagta 78  Q
    ||||| ||||||||||||||||||||||||||||| || || || || ||||| || ||||| ||||||||||||    
T  53499041 tacctttggtttgacccaactgcagattttcacacatactcaattctatggaatcctcaacgtattgtgtaagta 53499115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 53495086 - 53495155
Alignment:
Q  7 ctatggtttgacccaactgcagattttcacacttattccatcctctggaacccacaacgaattgtgtaag 76  Q
    ||||||||||| |||||||| ||||||||||| || ||||| || ||||| || ||||| ||||||||||    
T  53495086 ctatggtttgatccaactgctgattttcacacatactccattctttggaatcctcaacgcattgtgtaag 53495155  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 53502176 - 53502234
Alignment:
Q  1 ttctacctatggtttgacccaactgcagattttcacacttattccatcctctggaaccc 59  Q
    ||||| ||||||||||||||| | || ||||||||||||||||| ||| | ||||||||    
T  53502176 ttctatctatggtttgacccagcagctgattttcacacttattctatcatatggaaccc 53502234  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 235 - 347
Target Start/End: Complemental strand, 38214166 - 38214054
Alignment:
Q  235 gaatcaaatggtgttccattccccaaaagccaaccaatgagaatctattctagtctttggaatgctgatgattgggccacaagaggtggacttgttaaga 334  Q
    ||||||| |||| |||||||||| || | ||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||  | || || |    
T  38214166 gaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaa 38214067  T
Q  335 cagattggtccaa 347  Q
    | |||||||||||    
T  38214066 ctgattggtccaa 38214054  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 235 - 347
Target Start/End: Complemental strand, 38218385 - 38218273
Alignment:
Q  235 gaatcaaatggtgttccattccccaaaagccaaccaatgagaatctattctagtctttggaatgctgatgattgggccacaagaggtggacttgttaaga 334  Q
    ||||||| |||| |||||||||| || | ||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||  | || || |    
T  38218385 gaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaa 38218286  T
Q  335 cagattggtccaa 347  Q
    | |||||||||||    
T  38218285 ctgattggtccaa 38218273  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 243 - 347
Target Start/End: Original strand, 35018035 - 35018139
Alignment:
Q  243 tggtgttccattccccaaaagccaaccaatgagaatctattctagtctttggaatgctgatgattgggccacaagaggtggacttgttaagacagattgg 342  Q
    ||||||||| || || || | ||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||| | || || || ||||||    
T  35018035 tggtgttccttttccaaagaaccaaccaatgagaatctattccagcctgtggaatgctgatgattgggccacaagaggtggattggtgaaaactgattgg 35018134  T
Q  343 tccaa 347  Q
    |||||    
T  35018135 tccaa 35018139  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 347
Target Start/End: Original strand, 42991368 - 42991451
Alignment:
Q  264 ccaaccaatgagaatctattctagtctttggaatgctgatgattgggccacaagaggtggacttgttaagacagattggtccaa 347  Q
    |||||| |||||||| ||||| ||||||||||| ||||| |||||||| |||||||||||  | || || || |||||||||||    
T  42991368 ccaaccgatgagaatatattcaagtctttggaacgctgaagattgggctacaagaggtggtttggtgaaaactgattggtccaa 42991451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 328
Target Start/End: Complemental strand, 33811139 - 33811103
Alignment:
Q  292 tggaatgctgatgattgggccacaagaggtggacttg 328  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  33811139 tggaatgcagatgattgggctacaagaggtggacttg 33811103  T

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Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 193 - 353
Target Start/End: Original strand, 16942593 - 16942753
Alignment:
Q  193 ttctctgtggatggaactccaattagggaattcaaaaacatggaatcaaatggtgttccattccccaaaagccaaccaatgagaatctattctagtcttt 292  Q
    ||||||||||||||||  ||||| ||||| ||||| ||  | |||||||| || ||||| || || || | |||| | ||||| || ||||| |||||||    
T  16942593 ttctctgtggatggaagaccaataagggagttcaagaatttagaatcaaaaggggttccttttccaaagaaccaagccatgaggatatattcaagtcttt 16942692  T
Q  293 ggaatgctgatgattgggccacaagaggtggacttgttaagacagattggtccaatgctcc 353  Q
    ||||||| ||| |||||||||| ||||||||  |||| || ||||||||| ||||||||||    
T  16942693 ggaatgcagataattgggccactagaggtgggattgtgaaaacagattggaccaatgctcc 16942753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 193 - 353
Target Start/End: Original strand, 17013258 - 17013418
Alignment:
Q  193 ttctctgtggatggaactccaattagggaattcaaaaacatggaatcaaatggtgttccattccccaaaagccaaccaatgagaatctattctagtcttt 292  Q
    ||||||||||||||||  ||||| ||||| ||||| ||  | |||||||| || ||||| || || || | |||| | ||||| || ||||| |||||||    
T  17013258 ttctctgtggatggaagaccaataagggagttcaagaatttagaatcaaaaggggttccttttccaaagaaccaagccatgaggatatattcaagtcttt 17013357  T
Q  293 ggaatgctgatgattgggccacaagaggtggacttgttaagacagattggtccaatgctcc 353  Q
    ||||||| ||| |||||||||| ||||||||  |||| || ||||||||| ||||||||||    
T  17013358 ggaatgcagataattgggccactagaggtgggattgtgaaaacagattggaccaatgctcc 17013418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 342
Target Start/End: Original strand, 33450458 - 33450508
Alignment:
Q  292 tggaatgctgatgattgggccacaagaggtggacttgttaagacagattgg 342  Q
    |||||||| ||| |||||||||||||||||||||||||||| ||| |||||    
T  33450458 tggaatgcagataattgggccacaagaggtggacttgttaaaacaaattgg 33450508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 323
Target Start/End: Complemental strand, 10379856 - 10379795
Alignment:
Q  262 agccaaccaatgagaatctattctagtctttggaatgctgatgattgggccacaagaggtgg 323  Q
    ||||||||||||| ||| ||   |||| | |||||||||||||||||||||||||| |||||    
T  10379856 agccaaccaatgaaaatatacaatagtttatggaatgctgatgattgggccacaaggggtgg 10379795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 328
Target Start/End: Original strand, 47495938 - 47495974
Alignment:
Q  292 tggaatgctgatgattgggccacaagaggtggacttg 328  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  47495938 tggaatgcagatgattgggctacaagaggtggacttg 47495974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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