View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2808_low_1 (Length: 534)
Name: NF2808_low_1
Description: NF2808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2808_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 9 - 521
Target Start/End: Complemental strand, 38756452 - 38755935
Alignment:
| Q |
9 |
gtcacttggaaagtgttatgttatggagattattttgaattcatgtgtcttcgaatgggaagaccataaaatccatagcaaagcataatgtcatgataaa |
108 |
Q |
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| T |
38756452 |
gtcacttggaaagtgttatgttatggaaattattttgaattcatgtgtcttcgaatgggaagaccataaaatccatagcaaagcataatgtcatgataaa |
38756353 |
T |
|
| Q |
109 |
gatatgcttcgcaagatcatcatcatataagaaaagctaaggcatatataatacactaattagtgaagaaataatacaacattggaaagcttctagttct |
208 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38756352 |
gatatgcttcgcaagatcatcatcatataagaaaggctaaggcatatataatacactaattagtgaagaaataatacaacattggaaagcttctagttct |
38756253 |
T |
|
| Q |
209 |
agctagacaatatcaaatggtccttataattttatttaaaacttgagacaaatgtcaaatgtttaggaaattgtatataccaacgttatcttctcttgaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38756252 |
agctagacaatatcaaatggtccttataattttatttaaaacttgagacaaatgtcaaatgtttaggaaattgtatatgccaacgttatcttctcttgaa |
38756153 |
T |
|
| Q |
309 |
aaatataatttgttgaaccccacgttgataaatgtctaatggtaatggggataattatattttaac-----nnnnnnnnnnnnnnggatatactttttgg |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38756152 |
aaatataatttgttgaaccccacgttgataaatgtctaatggtaatggggataattatattttaacaaaaaaaaaaaaaaaaaaaggatatactttttgg |
38756053 |
T |
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| Q |
404 |
tgtatactcatgcgtacgtactgttgccaaccagaactcttcatgcgtaagtggcaaacaaacaagcatacgaaggacacaacctttcctcttaatttga |
503 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38756052 |
tgtatacacatgcgtacgtcctgttgccaaccagaactcttcatgcgtaagtggcaaacaaacaagcatacgaaggacacaacctttcctcttaatttga |
38755953 |
T |
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| Q |
504 |
ggaaaatatcatatatgt |
521 |
Q |
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|||||||||||||||||| |
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| T |
38755952 |
ggaaaatatcatatatgt |
38755935 |
T |
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