View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2808_low_15 (Length: 279)
Name: NF2808_low_15
Description: NF2808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2808_low_15 |
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| [»] chr2 (6 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 87; Significance: 9e-42; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 153 - 279
Target Start/End: Complemental strand, 11694023 - 11693897
Alignment:
| Q |
153 |
tgaattgcctcccaatattctaaaacttggactgcaagtaattgatggtagtcttgtccaatttaaaagacttaacgagcacttcgctagctatgtcagg |
252 |
Q |
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| T |
11694023 |
tgaattccttcccaatattctaaaacttcgactgcaagtaattgatggcattcttgtccaattgaaaagccttaatgagaacttcgctagctatttcagg |
11693924 |
T |
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| Q |
253 |
tgtagccccaaacactgcattgccaat |
279 |
Q |
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| T |
11693923 |
tgtagccccaaacactgcattgccaat |
11693897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 151 - 279
Target Start/End: Original strand, 11680714 - 11680842
Alignment:
| Q |
151 |
gttgaattgcctcccaatattctaaaacttggactgcaagtaattgatggtagtcttgtccaatttaaaagacttaacgagcacttcgctagctatgtca |
250 |
Q |
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| T |
11680714 |
gttgaattccctcccaatattttaaaacttcgactgcaagtaattgatggcattcttgtccaattgaaaagccataatgagaacttcgctagctatttca |
11680813 |
T |
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| Q |
251 |
ggtgtagccccaaacactgcattgccaat |
279 |
Q |
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| T |
11680814 |
ggtgtagccccaaacactgcattgccaat |
11680842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 153 - 279
Target Start/End: Original strand, 11729074 - 11729197
Alignment:
| Q |
153 |
tgaattgcctcccaatattctaaaacttggactgcaagtaattgatggtagtcttgtccaatttaaaagacttaacgagcacttcgctagctatgtcagg |
252 |
Q |
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| T |
11729074 |
tgaattccctcccaatattctaaaacttggacagcaagtaattg---gtagtcttgtccaatttaaaagacttaatgagaacttcactagctatttcagg |
11729170 |
T |
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| Q |
253 |
tgtagccccaaacactgcattgccaat |
279 |
Q |
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| T |
11729171 |
tgcagccccaaacactgcattgccaat |
11729197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 160 - 279
Target Start/End: Original strand, 11719966 - 11720085
Alignment:
| Q |
160 |
cctcccaatattctaaaacttggactgcaagtaattgatggtagtcttgtccaatttaaaagacttaacgagcacttcgctagctatgtcaggtgtagcc |
259 |
Q |
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| T |
11719966 |
cctcccaatattctaaaactttgactgtaagtaattgatggcattcttgtccaatttaaaagccttgatgagcacttcacttgctatttcaggtgtagcc |
11720065 |
T |
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| Q |
260 |
ccaaacactgcattgccaat |
279 |
Q |
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| T |
11720066 |
ccaaacactgcattgccaat |
11720085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 169 - 279
Target Start/End: Original strand, 11671845 - 11671955
Alignment:
| Q |
169 |
attctaaaacttggactgcaagtaattgatggtagtcttgtccaatttaaaagacttaacgagcacttcgctagctatgtcaggtgtagccccaaacact |
268 |
Q |
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| T |
11671845 |
attctaaaacttagactgcaaatagttgatggcattcttctccagctgaaaagccttaataagcacttcactagctatttcaggtgtagcaccaaacact |
11671944 |
T |
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| Q |
269 |
gcattgccaat |
279 |
Q |
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| T |
11671945 |
gcattgccaat |
11671955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 11680622 - 11680669
Alignment:
| Q |
57 |
tacacacttctaggaaagaatcaaatggatgatactaaagtatcatag |
104 |
Q |
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| T |
11680622 |
tacacacttataggaatgaatcaaatggatgatactaaagtaccatag |
11680669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 163 - 279
Target Start/End: Original strand, 7661936 - 7662052
Alignment:
| Q |
163 |
cccaatattctaaaacttggactgcaagtaattgatggtagtcttgtccaatttaaaagacttaacgagcacttcgctagctatgtcaggtgtagcccca |
262 |
Q |
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| T |
7661936 |
cccaataatctaaaactttgactgcaagtaattgataatagtcttgtccaattgaaaagccttaacaagaacttcactagctatctcaggtgtagcccca |
7662035 |
T |
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| Q |
263 |
aacactgcattgccaat |
279 |
Q |
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| T |
7662036 |
aacattgcattaccaat |
7662052 |
T |
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