View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2808_low_16 (Length: 246)
Name: NF2808_low_16
Description: NF2808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2808_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 27215255 - 27215027
Alignment:
| Q |
1 |
tttggtgccgaaccggatgcttcaacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaat |
100 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||| |
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| T |
27215255 |
tttggggccgaaccggatgcttcaacaacaatggaaagttcagctgtgccaccgccgattgtgcctctggtcaactcggttgcaatggtgctggcgcaat |
27215156 |
T |
|
| Q |
101 |
cccaccagcaacattggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtctgta |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27215155 |
cccaccagcaacattggtagaaataaccgtagcaacaaacgggggacaagatttctatgatgtgagcaatgtggatggattcaacgtgccaatgtctgta |
27215056 |
T |
|
| Q |
201 |
acgccacaaggtgggagtggtgactgcaa |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
27215055 |
acgccacaaggtgggagtggtgactgcaa |
27215027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 27443646 - 27443874
Alignment:
| Q |
1 |
tttggtgccgaaccggatgcttcaacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaat |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||| |
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| T |
27443646 |
tttggggccgaaccggatgcttcaacaacaatggaaagttcagctgtgccaccgccgattgtgcctctggtcaactcggttgcaatggtgctggcgcaat |
27443745 |
T |
|
| Q |
101 |
cccaccagcaacattggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtctgta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27443746 |
cccaccagcaacattggtagaaataaccgtagcaacaaacgggggacaagatttctaagatgtgagcaatgtggatggattcaacgtgccaatgtctgta |
27443845 |
T |
|
| Q |
201 |
acgccacaaggtgggagtggtgactgcaa |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
27443846 |
acgccacaaggtgggagtggtgactgcaa |
27443874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 27221217 - 27220989
Alignment:
| Q |
1 |
tttggtgccgaaccggatgcttcaacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaat |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
27221217 |
tttggggccgaaccggatgcttcaacaacaatggaaagttcagctgtgccaccgccgattgtgcctctggtcaagtcggttgcaacggtgctggggcaat |
27221118 |
T |
|
| Q |
101 |
cccaccagcaacattggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtctgta |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
27221117 |
cccaccagcaacattggtagaaataacggtagcaacagacgggggacaagacttctacgatgtgagcaatgtggacggattcaacgtgccaatgtctgta |
27221018 |
T |
|
| Q |
201 |
acgccacaaggtgggagtggtgactgcaa |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
27221017 |
acgccacaaggtgggagtggtgactgcaa |
27220989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 27432956 - 27432736
Alignment:
| Q |
9 |
cgaaccggatgcttcaacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccag |
108 |
Q |
| |
|
||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
27432956 |
cgaaccggatgctccaacaacaatggaaagttcagttgtgccaccgccgattgtgcctctggtcaagtcggttgtaacggtgctggcgcaatcccaccag |
27432857 |
T |
|
| Q |
109 |
caacattggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccaca |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27432856 |
caacattggtagaaataaccgtagcaacaaacgggggacaagatttctatgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccaca |
27432757 |
T |
|
| Q |
209 |
aggtgggagtggtgactgcaa |
229 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
27432756 |
aggtgggagtggtgactgcaa |
27432736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 27207884 - 27207656
Alignment:
| Q |
1 |
tttggtgccgaaccggatgcttcaacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaat |
100 |
Q |
| |
|
||||| ||||||| ||||||| | ||||||| |||| ||| ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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|
| T |
27207884 |
tttggggccgaactggatgctccgacaacaacggaaggttcagctgcgccaccgccgattgtgcctccggtcaagtcggttgcaacggtgctggcgcaat |
27207785 |
T |
|
| Q |
101 |
cccaccagcaacattggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtctgta |
200 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||| ||| |
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|
| T |
27207784 |
cccaccagcaacactggtagaaataacaatagcatccaacgggggacaagatttctacgatgtgagcaatgttgatgggttcaatgtgcccatgtccgta |
27207685 |
T |
|
| Q |
201 |
acgccacaaggtgggagtggtgactgcaa |
229 |
Q |
| |
|
| ||||||||||||||||||||||||||| |
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| T |
27207684 |
atgccacaaggtgggagtggtgactgcaa |
27207656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 27389171 - 27388950
Alignment:
| Q |
8 |
ccgaaccggatgcttcaacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccacca |
107 |
Q |
| |
|
|||||||||||||| | |||||| ||| |||||| |||||||| ||||||||||| ||||||||||| | ||||| ||||||||||||||||||||| |
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|
| T |
27389171 |
ccgaaccggatgctcaaccaacaacggacagtttacttgtgccactgccgattgtgcatctggtcaagttgcatgcaatggtgctggcgcaatcccacca |
27389072 |
T |
|
| Q |
108 |
gcaacattggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccac |
207 |
Q |
| |
|
||||| ||||| ||||| || || ||| |||| || |||||||||||||||||||||||||| || || || ||||||||||||||||| ||||| |||| |
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|
| T |
27389071 |
gcaactttggttgaaattacagtggcatcaaatggaggacaagatttctacgatgtgagcaacgttgacggtttcaacgtgccaatgtccgtaactccac |
27388972 |
T |
|
| Q |
208 |
aaggtgggagtggtgactgcaa |
229 |
Q |
| |
|
|||| || ||||| || ||||| |
|
|
| T |
27388971 |
aaggcggaagtggcgattgcaa |
27388950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 10 - 216
Target Start/End: Complemental strand, 27410125 - 27409919
Alignment:
| Q |
10 |
gaaccggatgcttcaacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagc |
109 |
Q |
| |
|
|||||||||||| | |||||| | ||||||||| |||||||| |||||||||| ||||||||||| || ||||| ||||||||||||||||||||||| |
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|
| T |
27410125 |
gaaccggatgctcaatcaacaaagaaaagtttagttgtgccacagccgattgtgggtctggtcaagtggggtgcaatggtgctggcgcaatcccaccagc |
27410026 |
T |
|
| Q |
110 |
aacattggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccacaa |
209 |
Q |
| |
|
||| || || ||||| ||| | ||| |||| || |||||||||||||||||||||||||| || || || |||||||||||||| | |||||| |||||| |
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|
| T |
27410025 |
aactttagttgaaattaccatggcatcaaatggaggacaagatttctacgatgtgagcaacgttgacgggttcaacgtgccaatttttgtaactccacaa |
27409926 |
T |
|
| Q |
210 |
ggtggga |
216 |
Q |
| |
|
||||||| |
|
|
| T |
27409925 |
ggtggga |
27409919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 38 - 170
Target Start/End: Complemental strand, 27454844 - 27454712
Alignment:
| Q |
38 |
gtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgtagcaaca |
137 |
Q |
| |
|
|||||| || ||||| ||||||||| ||| |||||| | || | ||| | ||| || |||||||||||||||||||||||||||||||| || || || |
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|
| T |
27454844 |
gtttagttgggccactgccgattgtatctccggtcaaatgggttccaatgatgcaggtgcaatcccaccagcaacattggtagaaataacggttacatca |
27454745 |
T |
|
| Q |
138 |
aacgggggacaagatttctacgatgtgagcaat |
170 |
Q |
| |
|
|| || ||||||||||||| |||||||||||| |
|
|
| T |
27454744 |
gacaggagacaagatttctatgatgtgagcaat |
27454712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 27415937 - 27416142
Alignment:
| Q |
11 |
aaccggatgcttcaacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagca |
110 |
Q |
| |
|
||||||||||| ||||| || ||||| ||||| |||||||| | ||||||| ||||||||||| | ||||| ||||||| || ||| |||||||| |
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|
| T |
27415937 |
aaccggatgctcaaacaataacggaaattttagttgtgccacaggtgattgtgggtctggtcaagttgagtgcaatggtgctgacgtaattacaccagca |
27416036 |
T |
|
| Q |
111 |
acattggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccacaag |
210 |
Q |
| |
|
|||||||| || || | || ||| |||| || ||||||||||| ||| ||||||||| |||| ||||| |||||| | |||||||| |||| || |
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|
| T |
27416037 |
acattggttgacattaaagtggcatcaaatggaggacaagatttatacagtgtgagcaacacttatgggttcaatgtgccagtatctgtaactccacgag |
27416136 |
T |
|
| Q |
211 |
gtggga |
216 |
Q |
| |
|
|||||| |
|
|
| T |
27416137 |
gtggga |
27416142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 20952716 - 20952648
Alignment:
| Q |
140 |
cgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccaca |
208 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||| | ||||| ||| ||||||| |||||||||| |
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|
| T |
20952716 |
cgggggacaagatttatatgatgtgagcaatgtggacaggttcaatgtgtcaatgtcaataacgccaca |
20952648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 196
Target Start/End: Original strand, 41457732 - 41457895
Alignment:
| Q |
33 |
ggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgtag |
132 |
Q |
| |
|
||||| ||||| || ||||| || ||||||| ||| || ||||||| ||||| ||||| || ||| | |||||||||||||| | |||| || ||||| |
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|
| T |
41457732 |
ggaaaatttagttgcgccactgctgattgtggctccggccaagtcgcttgcaatggtgccggtgcagttccaccagcaacattagcagaactacacgtag |
41457831 |
T |
|
| Q |
133 |
caacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtc |
196 |
Q |
| |
|
| | ||||| |||||||| | ||||||| | |||||||| || || |||||||| || ||||| |
|
|
| T |
41457832 |
aagccaacggtggacaagactactacgatataagcaatgttgacgggttcaacgtacccatgtc |
41457895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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