View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2808_low_17 (Length: 243)
Name: NF2808_low_17
Description: NF2808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2808_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 11672109 - 11672336
Alignment:
| Q |
1 |
agtgatgaatccaacttccaatgcgccttcaagaactgttaatatttcagtggcacgaggatgtgagtgaggagggttaactccccatggtgctatatcg |
100 |
Q |
| |
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|||||||||||||||||| || | |||||| ||||| || ||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
11672109 |
agtgatgaatccaacttctaacgtgccttcgagaacagtgaatatttcagtagcgcgaggatgtgagtgaggagggttaacaccccatggtgctatatcg |
11672208 |
T |
|
| Q |
101 |
acacgagccattgagatccctaatgtgttcaatcctggtagttgagatgcaaagactggagttactcttgacccagcagggttagtagtgtttcctgcta |
200 |
Q |
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|||||||||||||||||||||| |||||||||||| ||||| |||| ||||||||||||||||||| |||||||||||| ||||||||||| ||||||| |
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| T |
11672209 |
acacgagccattgagatccctagtgtgttcaatccaggtagctgagctgcaaagactggagttacttttgacccagcagcattagtagtgttgcctgcta |
11672308 |
T |
|
| Q |
201 |
tgtgaaggccactaaagaagaagtcatt |
228 |
Q |
| |
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|||||||||||||||||||||||||||| |
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|
| T |
11672309 |
tgtgaaggccactaaagaagaagtcatt |
11672336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 2 - 216
Target Start/End: Original strand, 11720240 - 11720454
Alignment:
| Q |
2 |
gtgatgaatccaacttccaatgcgccttcaagaactgttaatatttcagtggcacgaggatgtgagtgaggagggttaactccccatggtgctatatcga |
101 |
Q |
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||||||||||||||||| || | |||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
11720240 |
gtgatgaatccaacttctaacgtgccttcgagaacagtgaatatttcagtggcacggggatgtgagtgaggagggttaacaccccatggtgctatgtcga |
11720339 |
T |
|
| Q |
102 |
cacgagccattgagatccctaatgtgttcaatcctggtagttgagatgcaaagactggagttactcttgacccagcagggttagtagtgtttcctgctat |
201 |
Q |
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|||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
11720340 |
cacgagccatggagattcctagtgtgttcaatcctggtagttgagatgcaaagactggagttactcttgacccagcagggttagtagtgttgccagctat |
11720439 |
T |
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| Q |
202 |
gtgaaggccactaaa |
216 |
Q |
| |
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||||||||||||||| |
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| T |
11720440 |
gtgaaggccactaaa |
11720454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 11729353 - 11729568
Alignment:
| Q |
1 |
agtgatgaatccaacttccaatgcgccttcaagaactgttaatatttcagtggcacgaggatgtgagtgaggagggttaactccccatggtgctatatcg |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| || |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11729353 |
agtgatgaatccaacttccaatgtgccttcaagaacagtgaatatttccgtagcacgaggatgtgagtgaggagggttaactccccatggtgctatatcg |
11729452 |
T |
|
| Q |
101 |
acacgagccattgagatccctaatgtgttcaatcctggtagttgagatgcaaagactggagttactcttgacccagcagggttagtagtgtttcctgcta |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| || |||| ||||||||||||||| ||||| |||||| | ||||| |||||||| || |||| |
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| T |
11729453 |
acacgagccattgagatccctagtgtgttcaatcctggaagctgagctgcaaagactggagtcactctagacccaactgggtttgtagtgttgccagcta |
11729552 |
T |
|
| Q |
201 |
tgtgaaggccactaaa |
216 |
Q |
| |
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|||||||||||||||| |
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| T |
11729553 |
tgtgaaggccactaaa |
11729568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 11693740 - 11693525
Alignment:
| Q |
1 |
agtgatgaatccaacttccaatgcgccttcaagaactgttaatatttcagtggcacgaggatgtgagtgaggagggttaactccccatggtgctatatcg |
100 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||| || ||||||| || |||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
11693740 |
agtgatgaatccaacttctaatgttccttcaagaacagtgcatatttcggtagcacgaggatgtgagtgaggagagttaacaccccatggtgctatatca |
11693641 |
T |
|
| Q |
101 |
acacgagccattgagatccctaatgtgttcaatcctggtagttgagatgcaaagactggagttactcttgacccagcagggttagtagtgtttcctgcta |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||| |
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| T |
11693640 |
acacgagccattgagatccctagtgtgttcaatcctcgtagctgagatgcaaagactggagtcactcttgacccaacagcattagtagtgttgcctgcta |
11693541 |
T |
|
| Q |
201 |
tgtgaaggccactaaa |
216 |
Q |
| |
|
|||||||||||||||| |
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| T |
11693540 |
tgtgaaggccactaaa |
11693525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 11680999 - 11681214
Alignment:
| Q |
1 |
agtgatgaatccaacttccaatgcgccttcaagaactgttaatatttcagtggcacgaggatgtgagtgaggagggttaactccccatggtgctatatcg |
100 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||| || ||||||| || |||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
11680999 |
agtgatgaatccaacttctaatgttccttcaagaacagtgcatatttcggtagcacgaggatgtgagtgaggagagttaacaccccatggtgctatatca |
11681098 |
T |
|
| Q |
101 |
acacgagccattgagatccctaatgtgttcaatcctggtagttgagatgcaaagactggagttactcttgacccagcagggttagtagtgtttcctgcta |
200 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||| |||||||||||| || ||||||||||| ||||||| |
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| T |
11681099 |
acacaagccattgagatccctagtgtgttcaatcctcgtagctgagatgcaaagactggagtcactcttgacccaacaacattagtagtgttgcctgcta |
11681198 |
T |
|
| Q |
201 |
tgtgaaggccactaaa |
216 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
11681199 |
tgtgaaggccactaaa |
11681214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 11712772 - 11712605
Alignment:
| Q |
1 |
agtgatgaatccaacttccaatgcgccttcaagaactgttaatatttcagtggcacgaggatgtgagtgaggagggttaactccccatggtgctatatcg |
100 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||| |
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|
| T |
11712772 |
agtgatgaatccaacttctaatgttccttcaagaacagttaatatttcagtagcacgaggatgtgagtgaggagggttaacgccccaaggtgctatatcg |
11712673 |
T |
|
| Q |
101 |
acacgagccattgagatccctaatgtgttcaatcctggtagttgagatgcaaagactggagttactct |
168 |
Q |
| |
|
| | ||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
11712672 |
atatgagtcattgagatccctaatgtgttcaatcctggtagctgagctgcaaagactggagttactct |
11712605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 7662206 - 7662433
Alignment:
| Q |
1 |
agtgatgaatccaacttccaatgcgccttcaagaactgttaatatttcagtggcacgaggatgtgagtgaggagggttaactccccatggtgctatatcg |
100 |
Q |
| |
|
|||||||||||||||||| || | |||||||||||| || |||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
7662206 |
agtgatgaatccaacttctaaagtgccttcaagaacagtgaatatttcggtagcacgaggatgtgagtgaggagggttaattccccatggtgctatatcg |
7662305 |
T |
|
| Q |
101 |
acacgagccattgagatccctaatgtgttcaatcctggtagttgagatgcaaagactggagttactcttgacccagcagggttagtagtgtttcctgcta |
200 |
Q |
| |
|
|||||||||||||||||||||| ||| |||| ||| ||||| |||| ||||||||||||||||||||| ||||||| ||| || || ||||| ||||||| |
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| T |
7662306 |
acacgagccattgagatccctagtgtattcagtccgggtagctgagctgcaaagactggagttactctagacccagtaggatttgtggtgttgcctgcta |
7662405 |
T |
|
| Q |
201 |
tgtgaaggccactaaagaagaagtcatt |
228 |
Q |
| |
|
|||||||| ||||||| ||||||||||| |
|
|
| T |
7662406 |
tgtgaaggacactaaaaaagaagtcatt |
7662433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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