View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2808_low_2 (Length: 477)
Name: NF2808_low_2
Description: NF2808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2808_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 18 - 466
Target Start/End: Original strand, 21522792 - 21523238
Alignment:
| Q |
18 |
ctattttctctgttagtacaatttaagtatctttcactatcttgtgctcatgtactcatctccctattaataattgttttgtgtataggcactaacataa |
117 |
Q |
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| T |
21522792 |
ctattttctctgttagtacaatttaagtatctttcactatcttgtgctcatgtactcatctccctattaataatt--tttgtgtataggcactaacataa |
21522889 |
T |
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| Q |
118 |
aatttcacatgtacttctgcattatatcttgaaacaccacatgactaattttacattcattccgagccagtgggctgcgagacgaaaacaaaattctcgg |
217 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
21522890 |
aatttcacatgtacttttgcattaaatcttgaaacaccacatgactaattttacattcattctgagccactgggctgcgagacgaaaacaaaattctcgg |
21522989 |
T |
|
| Q |
218 |
tgttgcttactcactgcattaatattaatcttattctagtgcattatggtatttttagaccagctctgactaaagattatgttcttatgacagacatgga |
317 |
Q |
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| T |
21522990 |
tgttgcttactcactgcattaatattaatcttattctagtgcattatggtatttttagaccagctcttactaaagattatgttcttatgacagacatgga |
21523089 |
T |
|
| Q |
318 |
aactttataaccgaagggaattggtcgagttggtagacacgtcactggactggggatggtgtgtcgaggaagcttgtaaatatctgaagatagcccttct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
21523090 |
aactttataaccgaagggaattggtcgagttggtagacacatcactggactggggatggtgcctcgaggaagcttgtaaatatctgaagatttcccttct |
21523189 |
T |
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| Q |
418 |
gtgcactcagagttcgcctaggctccgaccaaccatgtcttctgtgctc |
466 |
Q |
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| T |
21523190 |
gtgcactcagagttcgcctaggctccgaccaaccatgtcttctgtgctc |
21523238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 258 - 461
Target Start/End: Original strand, 21517303 - 21517509
Alignment:
| Q |
258 |
gcattatggtatttttagacca--gctctgactaaagattatgttcttatgacagacatggaaactttataaccgaagggaattggtcgagttggtagac |
355 |
Q |
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||||||| |||||||||||||| ||||| | | ||||||||||||||| |||||||||| | | |||||| | || | ||||||| |||||| ||||| |
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| T |
21517303 |
gcattatcgtatttttagaccatagctcttattgtagattatgttcttattacagacatgggagcattataagcaaaagaaattggtggagttgatagac |
21517402 |
T |
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| Q |
356 |
acgtcactggactggggatggtgtgtcgaggaagcttgtaaatatctgaagatagcccttctgtgcactca-gagttcgcctaggctccgaccaaccatg |
454 |
Q |
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| T |
21517403 |
atatcactaaacaaggagttgtgtgtggaggaggcttgtaaatatctgaagattgccttgctttgcattcaggattgatcctaagctccggccaaccatg |
21517502 |
T |
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| Q |
455 |
tcttctg |
461 |
Q |
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||||||| |
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| T |
21517503 |
tcttctg |
21517509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 21517150 - 21517202
Alignment:
| Q |
102 |
ataggcactaacataaaatttcacatgtacttctgcattatatcttgaaacac |
154 |
Q |
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| T |
21517150 |
ataggcactaaaataaaattacacctgcacttctgcattatatcttgaaacac |
21517202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 463
Target Start/End: Original strand, 21530230 - 21530310
Alignment:
| Q |
383 |
gaggaagcttgtaaatatctgaagatagcccttctgtgcactcagagttcgcctaggctccgaccaaccatgtcttctgtg |
463 |
Q |
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| T |
21530230 |
gaggaggcttgtaaaattctgaagattgcccttctttgtactcaggatacacctaagctccggccaaccatgtcttctgtg |
21530310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 163
Target Start/End: Original strand, 21529986 - 21530016
Alignment:
| Q |
133 |
tctgcattatatcttgaaacaccacatgact |
163 |
Q |
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| T |
21529986 |
tctgcattatatcttgaaacaccacatgact |
21530016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 30147330 - 30147277
Alignment:
| Q |
125 |
catgtacttctgcattatatcttgaaacaccacatgactaattttacattcatt |
178 |
Q |
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| T |
30147330 |
catgtacttttgcattatatcttgaaactccacataactaattttactttcatt |
30147277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 161
Target Start/End: Original strand, 51122459 - 51122493
Alignment:
| Q |
127 |
tgtacttctgcattatatcttgaaacaccacatga |
161 |
Q |
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| T |
51122459 |
tgtacatctgcattatatcttgaaacaccacatga |
51122493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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