View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2808_low_5 (Length: 433)
Name: NF2808_low_5
Description: NF2808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2808_low_5 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 11 - 415
Target Start/End: Complemental strand, 3390418 - 3390014
Alignment:
| Q |
11 |
cagagataaacgtattcgagaaagttcatggaatacctatctatgaatactttgagaaagatcaacaaataaacaacttatttaacaaagcaatgactca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3390418 |
cagagataaacgtattcgagaaagttcatggaatacctatctatgaatactttgagaaagatcaacaaataaacaacttatttaacaaagcaatgactca |
3390319 |
T |
|
| Q |
111 |
aacatgtgcaattcacatgaaaataatccttgaaatatacaaaggatatgaaggaatatcaacactggttgatgtaggaggtggaaatggacaatgtctc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3390318 |
aacatgtgcaattcacatgaaaataatccttgaaatatacaaaggatatgaaggaatatcaacactggttgatgtaggaggtggaaatggacaatgtctc |
3390219 |
T |
|
| Q |
211 |
aaaatgattatatccaaatatccatcaataaaggcaatcaattttgatctcccacaagtgattgaacatgcaccaccctttccaggttattatttgatca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3390218 |
aaaatgattatatccaaatatccatcaataaaggcaatcaattttgatctcccacaagtgattgaacatgcaccaccctttccaggttattatttgatca |
3390119 |
T |
|
| Q |
311 |
catctcaaattttatatttagtgaccacttttccaagattatttgtttttgaaaagctttccctatagttatgaaatattgtcaaattttatttagggat |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3390118 |
catctcaaattttatatttagtgaccactttcccaagattatttgtttttgaaaagctttccctatagttatgaaatattgtcaaattttatttagggat |
3390019 |
T |
|
| Q |
411 |
cgaac |
415 |
Q |
| |
|
||||| |
|
|
| T |
3390018 |
cgaac |
3390014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 11 - 354
Target Start/End: Complemental strand, 3403701 - 3403358
Alignment:
| Q |
11 |
cagagataaacgtattcgagaaagttcatggaatacctatctatgaatactttgagaaagatcaacaaataaacaacttatttaacaaagcaatgactca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3403701 |
cagagataaacgtattcgagaaagttcatggaatacctatctatgaatactttgagaaagatcaacaaataaacaacttatttaacaaagcaatgactca |
3403602 |
T |
|
| Q |
111 |
aacatgtgcaattcacatgaaaataatccttgaaatatacaaaggatatgaaggaatatcaacactggttgatgtaggaggtggaaatggacaatgtctc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3403601 |
aacatgtgcaattcacatgaaaataatccttgaaatatacaaaggatatgaaggaatatcaacactggttgatgtaggaggtggaaatggacaatgtctc |
3403502 |
T |
|
| Q |
211 |
aaaatgattatatccaaatatccatcaataaaggcaatcaattttgatctcccacaagtgattgaacatgcaccaccctttccaggttattatttgatca |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | | |||||| |
|
|
| T |
3403501 |
aaaatgattatatccaaatatccatcaataaaggcaatcaattttgatctcccacaagtgattgaacatgcaccaccctctccaggtaaatgcttgatcg |
3403402 |
T |
|
| Q |
311 |
catctcaaattttatatttagtgaccacttttccaagattattt |
354 |
Q |
| |
|
||||| ||| |||||||||||| ||||||| ||||||| |||| |
|
|
| T |
3403401 |
catctgaaagtttatatttagttgccactttcccaagataattt |
3403358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 23 - 354
Target Start/End: Complemental strand, 3370061 - 3369730
Alignment:
| Q |
23 |
tattcgagaaagttcatggaatacctatctatgaatactttgagaaagatcaacaaataaacaacttatttaacaaagcaatgactcaaacatgtgcaat |
122 |
Q |
| |
|
||||| ||||||||||||||||| |||||| ||| |||||| ||||||||| |||||||||| || ||||||||||| |||||||| | |||||| || | |
|
|
| T |
3370061 |
tattcaagaaagttcatggaatatctatctttgagtactttaagaaagatccacaaataaaccacatatttaacaaatcaatgactgatacatgtacact |
3369962 |
T |
|
| Q |
123 |
tcacatgaaaataatccttgaaatatacaaaggatatgaaggaatatcaacactggttgatgtaggaggtggaaatggacaatgtctcaaaatgattata |
222 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| | |||||||| || |||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
3369961 |
ccacatgaaaacaatccttgaaatatacaaaggatatgaggatatatcaaccctaattgatgtaggaggtggaaatggacaaagtctcaaagccattata |
3369862 |
T |
|
| Q |
223 |
tccaaatatccatcaataaaggcaatcaattttgatctcccacaagtgattgaacatgcaccaccctttccaggttattatttgatcacatctcaaattt |
322 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||| || ||| || |||||| ||||| |||||| |
|
|
| T |
3369861 |
tccaaatatccatcaataaaggcaatcaactttgacctcccacaagtgattgaaaatgcaccaccctatcatggtaatcgtttgatagcatcttaaattt |
3369762 |
T |
|
| Q |
323 |
tatatttagtgaccacttttccaagattattt |
354 |
Q |
| |
|
| |||||||| |||||||| ||||||||||| |
|
|
| T |
3369761 |
tgtatttagtaaccactttctcaagattattt |
3369730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 31 - 297
Target Start/End: Complemental strand, 3360521 - 3360255
Alignment:
| Q |
31 |
aaagttcatggaatacctatctatgaatactttgagaaagatcaacaaataaacaacttatttaacaaagcaatgactcaaacatgtgcaattcacatga |
130 |
Q |
| |
|
||||||||||||||| | || | |||||||||| ||||||||| ||| ||||| | ||||||||||| ||||||| | ||||| ||| |||||||| |
|
|
| T |
3360521 |
aaagttcatggaataacaatgtttgaatactttaagaaagatccacagataaatgaaatatttaacaaatcaatgacggatacatgcacaactcacatga |
3360422 |
T |
|
| Q |
131 |
aaataatccttgaaatatacaaaggatatgaaggaatatcaacactggttgatgtaggaggtggaaatggacaatgtctcaaaatgattatatccaaata |
230 |
Q |
| |
|
||| |||||||||||||||| |||||| ||| |||||||||||||||||||||||||| ||||||| || ||| |||||||||||||||| || ||||| |
|
|
| T |
3360421 |
aaagaatccttgaaatataccaaggatttgagggaatatcaacactggttgatgtaggtggtggaacagggcaaagtctcaaaatgattatctctaaata |
3360322 |
T |
|
| Q |
231 |
tccatcaataaaggcaatcaattttgatctcccacaagtgattgaacatgcaccaccctttccaggt |
297 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||| |||||| || ||||||| ||||||||| |
|
|
| T |
3360321 |
cccatcaataaaggcaatcaattttgaccttccacaagtaattgaaaatacaccaccttttccaggt |
3360255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 23 - 275
Target Start/End: Complemental strand, 3299158 - 3298906
Alignment:
| Q |
23 |
tattcgagaaagttcatggaatacctatctatgaatactttgagaaagatcaacaaataaacaacttatttaacaaagcaatgactcaaacatgtgcaat |
122 |
Q |
| |
|
||||| |||||||| |||||||| | | ||||| ||||||| |||||||| |||||||||| | |||||||||||| |||||||| | ||||| | |
|
|
| T |
3299158 |
tattcaagaaagttaatggaatatcaaagtatgagtactttgggaaagatccacaaataaaccagttatttaacaaatcaatgactgatacatgcaatgt |
3299059 |
T |
|
| Q |
123 |
tcacatgaaaataatccttgaaatatacaaaggatatgaaggaatatcaacactggttgatgtaggaggtggaaatggacaatgtctcaaaatgattata |
222 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||| ||| || ||||||| ||||||||||||||||||| ||||||||| |||||| ||||||| |
|
|
| T |
3299058 |
tcacatgaaaagaatccttgacatatacaaaggatttgagggggtatcaactttggttgatgtaggaggtggcaatggacaaactctcaagttgattatt |
3298959 |
T |
|
| Q |
223 |
tccaaatatccatcaataaaggcaatcaattttgatctcccacaagtgattga |
275 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
3298958 |
gccaaatacccatcaataaaggcaatcaattttgaccttccacaagtgattga |
3298906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 23 - 297
Target Start/End: Complemental strand, 3349339 - 3349065
Alignment:
| Q |
23 |
tattcgagaaagttcatggaatacctatctatgaatactttgagaaagatcaacaaataaacaacttatttaacaaagcaatgactcaaacatgtgcaa- |
121 |
Q |
| |
|
||||| |||||||| |||||||| | | ||||| ||||||| |||||||| |||||||||| | |||| |||||| |||||||| || ||| ||| |
|
|
| T |
3349339 |
tattcaagaaagttaatggaatatcaaagtatgagtactttgggaaagatccacaaataaaccaaatattcaacaaatcaatgact--aatatgaccaaa |
3349242 |
T |
|
| Q |
122 |
-ttcacatgaaaataatccttgaaatatacaaaggatatgaaggaatatcaacactggttgatgtaggaggtggaaatggacaatgtctcaaaatgatta |
220 |
Q |
| |
|
||||||||||| ||| ||||||| |||||||||||| || ||||||||||| |||||||| | |||||||||||||||||| |||||||||||||| |
|
|
| T |
3349241 |
attcacatgaaagaaattcttgaaaaatacaaaggatacgagggaatatcaactttggttgatattggaggtggaaatggacaaactctcaaaatgatta |
3349142 |
T |
|
| Q |
221 |
tatccaaatatccatcaataaaggcaatcaattttgatctcccacaagtgattgaacatgcaccaccctttccaggt |
297 |
Q |
| |
|
| |||||||||||||| |||| |||||||||||| || || |||||||||||| ||||| ||||| |||||||| |
|
|
| T |
3349141 |
ttgaaaaatatccatcaattaagggaatcaattttgaccttcctcaagtgattgaaaatgcatcacccattccaggt |
3349065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 23 - 287
Target Start/End: Original strand, 23993385 - 23993649
Alignment:
| Q |
23 |
tattcgagaaagttcatggaatacctatctatgaatactttgagaaagatcaacaaataaacaacttatttaacaaagcaatgactcaaacatgtgcaat |
122 |
Q |
| |
|
||||| |||||||| |||| ||| |||| ||||| ||||||| |||||| |||||||||||| ||||||||||| |||||||| | ||||| | |
|
|
| T |
23993385 |
tattcaagaaagttaatgggatatctatgtatgagtactttggaaaagattcacaaataaacaaaatatttaacaaatcaatgactgatacatgcaatgt |
23993484 |
T |
|
| Q |
123 |
tcacatgaaaataatccttgaaatatacaaaggatatgaaggaatatcaacactggttgatgtaggaggtggaaatggacaatgtctcaaaatgattata |
222 |
Q |
| |
|
| | || | || |||| ||||| ||||||||| ||| ||| ||||||| ||||||||||||||||||| | ||||||| ||||||||| ||||| |
|
|
| T |
23993485 |
tgagattagaaaaatcgttgaagaatacaaaggtcttgagggagtatcaactatggttgatgtaggaggtggcagtggacaaagtctcaaaactattatt |
23993584 |
T |
|
| Q |
223 |
tccaaatatccatcaataaaggcaatcaattttgatctcccacaagtgattgaacatgcaccacc |
287 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| || ||||| |||||| |||||||||| |
|
|
| T |
23993585 |
gccaaatatccatcaataaagggaatcaattttgatcttcctcaagtcattgaaaatgcaccacc |
23993649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 180 - 287
Target Start/End: Complemental strand, 20720475 - 20720368
Alignment:
| Q |
180 |
tgatgtaggaggtggaaatggacaatgtctcaaaatgattatatccaaatatccatcaataaaggcaatcaattttgatctcccacaagtgattgaacat |
279 |
Q |
| |
|
|||||||||||| || || |||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||||| || ||||||||||||||| || |
|
|
| T |
20720475 |
tgatgtaggaggaggcaacggacaaagtctctaaatgattattgccaaatacccatcaataaaggcaatcaattttgacctaccacaagtgattgaaaat |
20720376 |
T |
|
| Q |
280 |
gcaccacc |
287 |
Q |
| |
|
|||||||| |
|
|
| T |
20720375 |
gcaccacc |
20720368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 127 - 287
Target Start/End: Original strand, 43365078 - 43365238
Alignment:
| Q |
127 |
atgaaaataatccttgaaatatacaaaggatatgaaggaatatcaacactggttgatgtaggaggtggaaatggacaatgtctcaaaatgattatatcca |
226 |
Q |
| |
|
||||||| ||| ||||||||||||| |||| ||| |||||||||||| |||||||||| |||||||||| ||||| | ||| || |||| ||||||| |
|
|
| T |
43365078 |
atgaaaagaatgcttgaaatatacactggatttgagggaatatcaacattggttgatgttggaggtggaagtggacgaaatcttgaattgataatatcca |
43365177 |
T |
|
| Q |
227 |
aatatccatcaataaaggcaatcaattttgatctcccacaagtgattgaacatgcaccacc |
287 |
Q |
| |
|
|||| |||| |||||||| ||| || |||||||| || ||||| |||||| |||||||||| |
|
|
| T |
43365178 |
aatacccattaataaagggaattaactttgatctgccccaagttattgaaaatgcaccacc |
43365238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 258
Target Start/End: Complemental strand, 6283185 - 6283069
Alignment:
| Q |
142 |
gaaatatacaaaggatatgaaggaatatcaacactggttgatgtaggaggtggaaatggacaatgtctcaaaatgattatatccaaatatccatcaataa |
241 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| | |||||||||| ||||| |||| ||| ||| || | || ||||| || || || ||||| || |||| |
|
|
| T |
6283185 |
gaaaaatacaaaggatttgaaggaatatcaatattggttgatgttggaggaggaattgggcaaagtttgaatatgataatctctaagtatccttctataa |
6283086 |
T |
|
| Q |
242 |
aggcaatcaattttgat |
258 |
Q |
| |
|
||| || ||||||||| |
|
|
| T |
6283085 |
agggcattaattttgat |
6283069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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