View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2808_low_6 (Length: 401)
Name: NF2808_low_6
Description: NF2808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2808_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 19 - 390
Target Start/End: Original strand, 33858280 - 33858651
Alignment:
| Q |
19 |
acacctgaccccggtggcattggatgggtggagacaccatatacatgctcagccccaataaaggtaaatgcaactccatctcaaataaattgaaaatgaa |
118 |
Q |
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| T |
33858280 |
acacctgaccccggtggcattggatgggtggagacaccatatacatgctcagccccaataaaggtaaatgcaactccatctcaaataaattgaaaatgaa |
33858379 |
T |
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| Q |
119 |
tatgaaatggatgaacatatatcatgtttgttaattataataatttgaatgtttgtaacagtataagtatgccaaccactccaatcctaactataaaaag |
218 |
Q |
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| T |
33858380 |
tatgaaatggatgaacatatatcatgtttgttaattataataatttgaatttttgtaacagtataagtatgccaaccactccaatcctaactataaaaag |
33858479 |
T |
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| Q |
219 |
actgggaaaaatactttgaagttccaattgatcaatcaacgtgcagatttctcttttgcattattttcaggtggattatccaatgtaagtcatatcttct |
318 |
Q |
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| T |
33858480 |
actgggaaaaatactttgaagttccaattgatcaatcaacgtgcagatttctcttttgcattattttcaggtggattatccaatgtaagtcatatcttct |
33858579 |
T |
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| Q |
319 |
gatcttgttatttggcatcttcaannnnnnncttgctaaatttgcaatgccaacagtgttttatttcttctt |
390 |
Q |
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| T |
33858580 |
gatcttgttatttggtatcttcaatttttttcttgctaaatttgcaatgccaacagtgttttatttcttctt |
33858651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 200 - 342
Target Start/End: Original strand, 33873289 - 33873431
Alignment:
| Q |
200 |
caatcctaactataaaaagactgggaaaaatactttgaagttccaattgatcaatcaacgtgcagatttctcttttgcattattttcaggtggattatcc |
299 |
Q |
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| T |
33873289 |
caatcctaaatattaaaagactgggaaaactactttgaagttccaatcgatcaatcaacgtgcagatttctcctttgcactactttcaggtggattatcc |
33873388 |
T |
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| Q |
300 |
aatgtaagtcatatcttctgatcttgttatttggcatcttcaa |
342 |
Q |
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| T |
33873389 |
aatgtaagtcatatctactgatcttgttttttggtatcttcaa |
33873431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 188 - 317
Target Start/End: Original strand, 33868805 - 33868935
Alignment:
| Q |
188 |
tgccaaccactccaatcctaactataaaaagactgggaaaaatactttgaagttcc-aattgatcaatcaacgtgcagatttctcttttgcattattttc |
286 |
Q |
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| T |
33868805 |
tgccaaccactccaatcctaaatacaaaaagacaggaaaaaatactttgaagttttgaattgatcaatcaacgtgcagatttctcttttgcattattttc |
33868904 |
T |
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| Q |
287 |
aggtggattatccaatgtaagtcatatcttc |
317 |
Q |
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| T |
33868905 |
aggtggattatccaatgtaagtcatttcttc |
33868935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 289
Target Start/End: Original strand, 42781595 - 42781638
Alignment:
| Q |
246 |
ttgatcaatcaacgtgcagatttctcttttgcattattttcagg |
289 |
Q |
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| T |
42781595 |
ttgatcaatcaacgtgcagatttctcctttgcgctattttcagg |
42781638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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