View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2809_high_1 (Length: 645)
Name: NF2809_high_1
Description: NF2809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2809_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 19 - 553
Target Start/End: Complemental strand, 20687077 - 20686545
Alignment:
| Q |
19 |
ccccatgttgagacaactgatttttctttaaattttcagggagttactcctggctttctatagatcaaataataaacggaagcctgagaggatcatattt |
118 |
Q |
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| T |
20687077 |
ccccatgttgagtcaactgatttttctttaaattttcagggagttactcctggctttctatagatcaaataataaacggaagcctgagaggatcatattt |
20686978 |
T |
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| Q |
119 |
tacaggttagatttggttttaactaaatgatacatatggatgtctacgtgcatatttaaatttatttaatatgatttctttttcaatattaatttgtact |
218 |
Q |
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| T |
20686977 |
tacaggttggatttggttttaactaaatgatacataaggatgtctatgtgcatatttaaatttatttaatatgatttctttttcaatattaatttgtgct |
20686878 |
T |
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| Q |
219 |
tatcagagatggagtaagtgaagggcagtttagtcaggttttgctgtatgagatggatgcaatttggaaggtatggcaatctaactccacannnnnnnnn |
318 |
Q |
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| T |
20686877 |
tatcagagatggagtaagtgaagggcagtttagtcaggttttgctgtatgagatggatgcaatttggaaggtatggcaatctaactccacattttatttt |
20686778 |
T |
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| Q |
319 |
nnnnnnnnnnncggaagggcctagtggcccaactcatacactcaaacacaaaacacattgggtcatgcgggtttgaatcagcgcctaacatacgtccata |
418 |
Q |
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| T |
20686777 |
atttttgttttcggaagggcctagtggcccaactcgtacactcaaacacaaaacacattgggtcatgcgggtttgaatcagcgcctaacatacgtccata |
20686678 |
T |
|
| Q |
419 |
gatcagataaccactgagctgaggtcaattaacatatttaacaaccacagaacatagtgaccacagaaatgctcttgctgttttttcttgannnnnnnnc |
518 |
Q |
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| T |
20686677 |
tatcagataaccactgagctgaggtcaattaacatatttaacaaccacagaacatagtgaccacagaaatgctcttgctgttttttcttgattttttttc |
20686578 |
T |
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| Q |
519 |
tcgttctatgcaagtgccttgtatagatagaataa |
553 |
Q |
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| T |
20686577 |
tcgttctatgcaagtgccttg--tagatagaataa |
20686545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 197 - 293
Target Start/End: Complemental strand, 20662616 - 20662520
Alignment:
| Q |
197 |
tttttcaatattaatttgtacttatcagagatggagtaagtgaagggcagtttagtcaggttttgctgtatgagatggatgcaatttggaaggtatg |
293 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| | |||||||| |
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| T |
20662616 |
ttttacaatattaatttgtgattatcagagatggagtaagtgaagggcagtttagtcaggttttgctttatgagatggatgcgattagaaaggtatg |
20662520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 20662791 - 20662676
Alignment:
| Q |
24 |
tgttgagacaa--ctgatttttctttaaattttcagggagttactcctggctttctatagatcaaataataaacggaagcctgagaggatcatattttac |
121 |
Q |
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||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||| | ||| ||| ||||||| |||||| ||||||||| |
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| T |
20662791 |
tgttgagacaaagctgatttttcttttaattttcagggagttgctcctggctttctatcg---aaaaaatgggtctaagcctgcgaggattatattttac |
20662695 |
T |
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| Q |
122 |
aggttagatttggttttaa |
140 |
Q |
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||||| ||||||||||||| |
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| T |
20662694 |
aggttggatttggttttaa |
20662676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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