View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2809_high_4 (Length: 366)
Name: NF2809_high_4
Description: NF2809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2809_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 3367340 - 3367631
Alignment:
| Q |
18 |
ctaacaatataaaacaaaatcacattggagtgttatgtcttgtatcagtgtgaaatataattccaggaattaatgaatgaataacgaagaacataaaaat |
117 |
Q |
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| T |
3367340 |
ctaacaatataaaacaaaatcacattggagtgttatgtcttgtatcagtgtgaaatataattccaggaattaatgaatgaataacgaagaacataaaaat |
3367439 |
T |
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| Q |
118 |
tccaatatctctcaaggggttcttcaattcacattggattgtcatgtagttcaaaacaaaattcaatcctgtatgcttcctctttttcgcatttcatccc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3367440 |
tccaatatctctcaaggggttcttcaattcacattggattgtcatgtagttcaaaacaaaattcaatcctgtatgcttcctctttttcgcatttcatccc |
3367539 |
T |
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| Q |
218 |
gagattatgtagctgacattttacaaaatcactttctcagagtcacttctattagtctgttagaggttgttactgatcacttaggcagttac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3367540 |
gagattatgtagctgacattttacaaaatcactttctcagagtcacttctattagtctgttagaggttgttactgatcacttaggcagttac |
3367631 |
T |
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