View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2809_high_6 (Length: 338)
Name: NF2809_high_6
Description: NF2809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2809_high_6 |
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| [»] scaffold0126 (1 HSPs) |
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Alignment Details
Target: scaffold0126 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0126
Description:
Target: scaffold0126; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 88 - 320
Target Start/End: Original strand, 19926 - 20158
Alignment:
| Q |
88 |
gttgcttgagagattaaaatcaaatataatgattatgataatgttgtctacctaatgattcctaagtttcttattcttgttgtgattgattactttgaat |
187 |
Q |
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| T |
19926 |
gttgcttgagagattaaaatcaaatataatgattatgataatgttgtctacctaatgattcctaagtttcttattcttgttgtgattgattactttgaat |
20025 |
T |
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| Q |
188 |
acatcattcaaataaattataagttggagacttgtaattaaaatcgattattatttagcaaagttaacaaagaaatttaggatatctaaacaacttggtc |
287 |
Q |
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| T |
20026 |
agatcattcaaataaattatcagttggagacttgtaattaaaatcgattattatttagcaaagttcacaatgaaatttaggatgtctaaacaacttggtc |
20125 |
T |
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| Q |
288 |
aattttgctacggtggaaaagttttgagttttt |
320 |
Q |
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| T |
20126 |
aatttttctacggtggaaaagttttgagttttt |
20158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 88 - 240
Target Start/End: Complemental strand, 24979799 - 24979653
Alignment:
| Q |
88 |
gttgcttgagagattaaaatcaaatataatgattatgataatgttgtctacctaatgattcctaagtttcttattcttgttgtgattgattactttgaat |
187 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
24979799 |
gttgcttgagagattaaaatcaaatataatgattatgataatgttttctacctaat------taagtttcttattcttgttgtgattgattactttgaat |
24979706 |
T |
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| Q |
188 |
acatcattcaaataaattataagttggagacttgtaattaaaatcgattatta |
240 |
Q |
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| T |
24979705 |
acatcattcaaataaattatcagttggagacttgtaattaaaatcgattatta |
24979653 |
T |
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