View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2809_high_7 (Length: 281)
Name: NF2809_high_7
Description: NF2809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2809_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 14812591 - 14812357
Alignment:
| Q |
1 |
ggtgatgatgtttatcaaattgttgcatgataaagatttgttccataagtactataaaaagcaccttgcaaagaggcttttgtttgggaaaacaatatct |
100 |
Q |
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| T |
14812591 |
ggtgatgatgtttatcaaattgttgcatgataaagatttgttccataagtactataaaaagcaccttccaaagaggcttttgtttgggaaaacaatatct |
14812492 |
T |
|
| Q |
101 |
gaagatatagagagaagtctcgctgttaaactcaaaagagtatgtggttacaaatttgcactattagagataatggttatggatataaaaacctcaaaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14812491 |
gaagatatagagagaagtctcgctgttaaactcaaaagagtatgtggttacaaatttgcactattagagataatggttatggatataaaaacctcaaaag |
14812392 |
T |
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| Q |
201 |
aaatgttacaaggcttttatagaagccacgctaag |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
14812391 |
aaatgttacaaggcttttatagaagccacgctaag |
14812357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 15259586 - 15259352
Alignment:
| Q |
1 |
ggtgatgatgtttatcaaattgttgcatgataaagatttgttccataagtactataaaaagcaccttgcaaagaggcttttgtttgggaaaacaatatct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
15259586 |
ggtgatgatgtttatcaaattgttgcatgataaagatttgttccataagtactataaaaagcaccttacaaagaggcttttgtttggaaaaacaatatct |
15259487 |
T |
|
| Q |
101 |
gaagatatagagagaagtctcgctgttaaactcaaaagagtatgtggttacaaatttgcactattagagataatggttatggatataaaaacctcaaaag |
200 |
Q |
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| T |
15259486 |
gaagatatagagagaaatctcgctgttaaactcaaaagagtatgtggttacaaatttgcactattagagataatggttatggatataaaaacctcaaaag |
15259387 |
T |
|
| Q |
201 |
aaatgttacaaggcttttatagaagccacgctaag |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
15259386 |
aaatgttacaaggcttttatagaagccacgctaag |
15259352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 14805009 - 14804940
Alignment:
| Q |
163 |
attagagataatggttatggatataaaaacctcaaaagaaatgttacaaggcttttatagaagccacgct |
232 |
Q |
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|||||||| ||||||| |||| |||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
14805009 |
attagagacaatggttgctgatacgaaaacctcaaaagaaacgttacaagggttttatagaagccacgct |
14804940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 15252003 - 15251934
Alignment:
| Q |
163 |
attagagataatggttatggatataaaaacctcaaaagaaatgttacaaggcttttatagaagccacgct |
232 |
Q |
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|||||||| ||||||| |||| |||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
15252003 |
attagagacaatggttgctgatacgaaaacctcaaaagaaacgttacaagggttttatagaagccacgct |
15251934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 17521589 - 17521820
Alignment:
| Q |
1 |
ggtgatgatgtttatcaaattgttgcatgataaagatttgttccataagtactataaaaagcaccttgcaaagaggcttttgtttgggaaaacaatatct |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
17521589 |
ggtggtgatgtttatcaaattgttgcatgataaagatttgttccataagtactataaaaagcaccttgcaaagaggcttttgtttggcaaaacaatatct |
17521688 |
T |
|
| Q |
101 |
gaagatatagagagaagtctcgctgttaaactcaaaagagtatgtggttacaaatttgcactattagagataatggttatggatataaaaacctcaaaag |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521689 |
gaagatatagagagaaatctcgctgttaaactcaaaagagtatgtggttacaaatttgcactattagagataatggttatggatataaaaacctcaaaag |
17521788 |
T |
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| Q |
201 |
aaatgttacaaggcttttatagaagccacgct |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
17521789 |
aaatgttacaaggcttttatagaagccacgct |
17521820 |
T |
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