View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2809_low_10 (Length: 241)
Name: NF2809_low_10
Description: NF2809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2809_low_10 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 4 - 241
Target Start/End: Complemental strand, 21408882 - 21408645
Alignment:
| Q |
4 |
atactcagtgttgcataataatgcataggattcaaattcaatcacgaaatatagacagagggaaaatggaaataaacacaaagcatgattgttatgaatg |
103 |
Q |
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| T |
21408882 |
atactcagtgttgaataataatgcataggattcaaattcaatcacgaaatatagacagagggaaaatggaaataaacacaaagcatgattgttatgaatg |
21408783 |
T |
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| Q |
104 |
aattatcatattatcaaaataaaaattcaactaattaggaaataaacctaaaacaccttaaccttgttaaatctctatcatcagttaataaagttttaga |
203 |
Q |
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| T |
21408782 |
aattatcatattatcaaaataaaaattcaactaattaggaaataaacctaaaacaccttaaccttgttaaaactctatcatcagttaataaagttttaga |
21408683 |
T |
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| Q |
204 |
taaattcaactaattaggaaacgaacctaaattacctt |
241 |
Q |
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| T |
21408682 |
taaattcaactaattaggaaacaaacctaaattacctt |
21408645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 29008335 - 29008561
Alignment:
| Q |
21 |
ataatgcataggattcaaattcaatcacgaaatatagacagagggaaaatggaaataaacacaaagcatgattgttatgaatgaattatcatattatcaa |
120 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29008335 |
ataatgcataggattcaaattcaatcacgaaatatacacagaaggaaaatgaaactaaacacaaagcatgattgttatgaatgaattatcatattatcaa |
29008434 |
T |
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| Q |
121 |
aataaaaattcaactaattaggaaataaacctaaaacaccttaaccttgt------taaatctctatcatcagttaataaagttttagataaattcaact |
214 |
Q |
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| T |
29008435 |
aataaaaattcaactaattaggaaataaacctaaaacaccttaaccttatcaataataatactctatcattagttaataaagtttcatataaattcaact |
29008534 |
T |
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| Q |
215 |
aattaggaaacgaacctaaattacctt |
241 |
Q |
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| T |
29008535 |
aattaggaaacgaacctaaagtacctt |
29008561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 167
Target Start/End: Complemental strand, 21408681 - 21408640
Alignment:
| Q |
126 |
aaattcaactaattaggaaataaacctaaaacaccttaacct |
167 |
Q |
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| T |
21408681 |
aaattcaactaattaggaaacaaacctaaattaccttaacct |
21408640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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