View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2809_low_2 (Length: 616)
Name: NF2809_low_2
Description: NF2809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2809_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 20 - 607
Target Start/End: Original strand, 53603938 - 53604547
Alignment:
| Q |
20 |
ataccttctcattttatgttgtattaattgttaaggtatacatgtttacaggttccttatgctgctgcaatgttctcaattttgtttgtattttcacaac |
119 |
Q |
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| T |
53603938 |
ataccttctcattttatgttgtattaattattaaggtatacatgtttacaggttccttatgctgctgcaatgttctcaattttgtttgtattttcacaac |
53604037 |
T |
|
| Q |
120 |
cgtgtgtgagtttcattcctcattctatatatctttggtattcaaaatataattttaattaatttttacttttgcactttttgcagatacgaagtattgt |
219 |
Q |
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| T |
53604038 |
cgtgtgtgagtttcattcctcattctatatatctttagtattcaaaaaataattttaattaa--tttacttttgcactttttgcagatacgaagtattgt |
53604135 |
T |
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| Q |
220 |
ttctaaacaagtcgatccccgtgagcaggtatcatgttaatagtattggttagtgg---------------------aggaaaaacttatacataaaata |
298 |
Q |
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| T |
53604136 |
ttctaaacaagtcgatccccgtgagcaggtatcatgttaatagtattggttagtggcaatatttttgttaggaaaataggaaaaacttatacataaaata |
53604235 |
T |
|
| Q |
299 |
tattgattaggnnnnnnnttgaatggcacctaagaacacaataaaaggaagacatgattggaacatagtcaatttataatggatatcttctttcagggaa |
398 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
53604236 |
tattgattaggaaaaaaattgaatggcacctaagaacacaataaaaggaagacatgattggaacatagtcaacttctaatggatatcttctttcagggaa |
53604335 |
T |
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| Q |
399 |
gggctcaaggttgcatctcaggcatatgttcgattgcacatattgtatctcctttggctttctctccattaacgggtgagtggaaactcataatgtccca |
498 |
Q |
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| T |
53604336 |
gggctcaaggttgcatctcaggcatatgttcgattgcacatattgtatctcctttggctttctctccattaacgggtgagtggaaactcataatgtccca |
53604435 |
T |
|
| Q |
499 |
tcatgttcatattattacagaaaat----tattaacaataacttattctcnnnnnnnnnagctctatttctatctgaaaaggcaccttttaattttcctg |
594 |
Q |
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| T |
53604436 |
tcatgttcatattattacagaaaattatatattaacaaaaacttattctc-ttttttttagctctatttctatctgaaaaggcaccttttaattttcctg |
53604534 |
T |
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| Q |
595 |
gcttcagtataat |
607 |
Q |
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| T |
53604535 |
gcttcagtataat |
53604547 |
T |
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