View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2809_low_3 (Length: 565)
Name: NF2809_low_3
Description: NF2809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2809_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 29 - 552
Target Start/End: Complemental strand, 48658155 - 48657632
Alignment:
| Q |
29 |
cgtgacaggtagggactctccagtaagggctgactgcatgaatcaaaaccaagtcatcatatgaactccgtcctgattcttgatcagttatatacagttt |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48658155 |
cgtgacaggtagggactctccagtaagggctgactgcatgaatcaaaaccaagtcatcatatgaactccgtcctgattcttgatcagttatatacagttt |
48658056 |
T |
|
| Q |
129 |
atgtcatgaaaaaatatatagtgaaaacattaatgagaagaaacttgtaacacaatttttcttcatttccgtctaacaaatgaagacttgcctggtcaat |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48658055 |
atgtcatgaaaaaatatatagtgaaaacattaatgagaagaaacttgtaacacaatttttcttcatttccgtctaacaaatgaagacttgcctggtcaat |
48657956 |
T |
|
| Q |
229 |
tttgagagggtctccttcaagcaagcgagcatcagctggaatgatatctcctagctttatgctgattatatccccaggtactaaaatagccgcatcatct |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48657955 |
tttgagagggtctccttcaagcaagcgagcatcagctggaatgatatctcctagctttatgctgattatatccccaggtactaaaatagccgcatcatct |
48657856 |
T |
|
| Q |
329 |
tctttccactgaccatctcttagaacctgaatgattagatttacttattaatggtatatgcaaggaaggagccatagtcaagttcaggaagaaggtaatt |
428 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
48657855 |
tctttccactgaccatttcttctaacctgaatgattagatttacttattaatggtatatgcaaggaaggagccataatcaagttcaggaagaaggtaatt |
48657756 |
T |
|
| Q |
429 |
catttattccccaaaaactcttcggaggaaggtcacctttgttcgaggagctaagcgagccattagtgctgctgcagcagtaccagcattattttcttct |
528 |
Q |
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| T |
48657755 |
catttattccccaaaaactcttaagaggaaggtcacctttgttcgaggagctaagcgagccattagtgctgctgcagcagtaccagcattattttcttct |
48657656 |
T |
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| Q |
529 |
ataaaactaattgttgagtttatt |
552 |
Q |
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| T |
48657655 |
ataaaactaattgttgagtttatt |
48657632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 486 - 548
Target Start/End: Original strand, 45199947 - 45200009
Alignment:
| Q |
486 |
agccattagtgctgctgcagcagtaccagcattattttcttctataaaactaattgttgagtt |
548 |
Q |
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| T |
45199947 |
agccataagtgctgcagcagcatttccagcattgttttcttctataaaactaatggttgagtt |
45200009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 356
Target Start/End: Complemental strand, 50274338 - 50274227
Alignment:
| Q |
245 |
tcaagcaagcgagcatcagctggaatgatatctcctagctttatgctgattatatccccaggtactaaaatagccgcatcatcttctttccactgaccat |
344 |
Q |
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||||||| ||||||||||| |||||||||||||||| || |||||||| ||||| || || || ||||| || ||||| ||||| |||| ||||| |
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| T |
50274338 |
tcaagcagacgagcatcagcaggaatgatatctcctaatttaatgctgatgatatcacctgggaccaaaattgcagcatcttcttcagaccacctaccat |
50274239 |
T |
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| Q |
345 |
ctcttagaacct |
356 |
Q |
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|||| ||||||| |
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| T |
50274238 |
ctctgagaacct |
50274227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 1460509 - 1460442
Alignment:
| Q |
257 |
gcatcagctggaatgatatctcctagctttatgctgattatatccccaggtactaaaatagccgcatc |
324 |
Q |
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| T |
1460509 |
gcatcagctgggatgatgtctcctaacttaatgctgattatgtctcctggtactaaaattgcagcatc |
1460442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 1498827 - 1498894
Alignment:
| Q |
257 |
gcatcagctggaatgatatctcctagctttatgctgattatatccccaggtactaaaatagccgcatc |
324 |
Q |
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| T |
1498827 |
gcatcagctggaacaatatctcctaacttgatgctgattatgtctcctggtactaaaattgcagcatc |
1498894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 499 - 551
Target Start/End: Original strand, 974956 - 975008
Alignment:
| Q |
499 |
gctgcagcagtaccagcattattttcttctataaaactaattgttgagtttat |
551 |
Q |
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| T |
974956 |
gctgctgcattaccagcattattttcttctatgaaacttatggtagagtttat |
975008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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