View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2809_low_4 (Length: 451)
Name: NF2809_low_4
Description: NF2809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2809_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 16 - 434
Target Start/End: Complemental strand, 25967674 - 25967249
Alignment:
| Q |
16 |
atcaacgaaaaagagatgaaattaatttgtcttgcatgtggaatttttattttaataaatcacgtgggaatttttaattacccgttcatatacataaagt |
115 |
Q |
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| T |
25967674 |
atcaacgaaaaagagataaaattaatttgtcttgcatgtggaatttttattttaataaatcacgtgggaatttttaattacatgttcatatacataaagt |
25967575 |
T |
|
| Q |
116 |
ccaattagaataataattaataagt-------gctagtttgataagtaatttgattgatcatatattaatattttttcatatgatgtcacagattgaagc |
208 |
Q |
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| T |
25967574 |
ccaattagaataataattaataagtaacttcggctagtttgataagtaatttgattgatcatatattaatattttttcatatgatgtcacagattgaagc |
25967475 |
T |
|
| Q |
209 |
accgtggtccagactggagtgggctccaccaacatggtgataactatttggctcatcaaaggttagccatcgttgatcctgcttctggtgatcaacctct |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25967474 |
accgtggtccagactggagtgggctccaccaacatggtgataactatttggctcatcaaaggttagccattgttgatcctgcttctggtgatcaacctct |
25967375 |
T |
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| Q |
309 |
cttcaatgaagataaatcaattattgtcacggtaataatattctatagtttattacattttttatactatatagtttttaaagtggtagtaacatataaa |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25967374 |
cttcaatgaagataaatcaattattgtcacggtaataatattctatagtttattacattttttatactatatagtttttaaagtggtagtaacatataaa |
25967275 |
T |
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| Q |
409 |
ttttatcataaaattcaggtgaatgg |
434 |
Q |
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| T |
25967274 |
ttttatcataaaattcaggtgaatgg |
25967249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 197 - 342
Target Start/End: Complemental strand, 30274833 - 30274688
Alignment:
| Q |
197 |
acagattgaagcaccgtggtccagactggagtgggctccaccaacatggtgataactatttggctcatcaaaggttagccatcgttgatcctgcttctgg |
296 |
Q |
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||||||||||||||||||| || || |||||||||||||||||||||||||| || |||||| || ||| |||||||||| ||||||||||||||||| |
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| T |
30274833 |
acagattgaagcaccgtggccctgattggagtgggctccaccaacatggtgactgctttttggcacaccaacggttagccatagttgatcctgcttctgg |
30274734 |
T |
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| Q |
297 |
tgatcaacctctcttcaatgaagataaatcaattattgtcacggta |
342 |
Q |
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|||||||||||||| |||||||| ||||| | |||||||||||| |
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| T |
30274733 |
ggatcaacctctctttaatgaagacaaatctgtcattgtcacggta |
30274688 |
T |
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