View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2809_low_5 (Length: 439)
Name: NF2809_low_5
Description: NF2809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2809_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 24 - 423
Target Start/End: Complemental strand, 7247245 - 7246846
Alignment:
| Q |
24 |
cagaagcatcacaggttcagtcattataagttcagactcactatctcacccatccaccacatagcaaaaattagtgaagaggtggcagaacacaattttc |
123 |
Q |
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| T |
7247245 |
cagaagcatcacaggttcagtcattataagttcagactcactatctcacccatccaccacatagcaaaaattagtgaagaggtggcagaacacaattttc |
7247146 |
T |
|
| Q |
124 |
atattcattaactattatccatccatgcacagtacaataatctccaacccctcttaaccctcttaaataaaagcatcttcaagaaaatccttatttttgt |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7247145 |
atattcattaactattatccatccatgcacagtacaataatctccaacccctcttaaccctcttaaataaaagcatcttcaagaaaatccttatttttgt |
7247046 |
T |
|
| Q |
224 |
ttctcaaaaaatgatgagtgcaagttcaagaaataggtcacttttcacaccaaatcaatggcaagaacttgaacaacaagccctagtttttaaatacatg |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7247045 |
ttctcaaaaaatgatgagtgcaagttcaagaaataggtcacttttcacaccaaatcaatggcaagaacttgaacaacaagccctagtttttaaatacatg |
7246946 |
T |
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| Q |
324 |
gttactggaacacctattccaccagatctcatatactctattaagagaagtttagacacttcaatatcttcaagaatctttcctcatccaccaagtaagt |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7246945 |
gttactggaacacctattccaccagatctcatatactctattaagagaagtttagacacttcaatatcttcaagaatctttcctcatccaccaagtaagt |
7246846 |
T |
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