View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_high_10 (Length: 527)
Name: NF2810_high_10
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 5 - 508
Target Start/End: Original strand, 41213892 - 41214395
Alignment:
| Q |
5 |
gagtgagatgaacaagaaagattaaatcttcacgtgattttattttttgctattaatttgtataatcttagttacaattatttcaaacttgtttcctnnn |
104 |
Q |
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| T |
41213892 |
gagtgatatgaacaagaaagattaaatcttcacgtgattttattttttgctattaatttgtataatcttagttacaattatttcaaacttgtttcctaaa |
41213991 |
T |
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| Q |
105 |
nnnnnnnnngtttttcaaacttaacttgcagaaaattgatatgccgtaaagattgaatcaaaacttggtacaaattgcacgcaaggtgtttgttgaattg |
204 |
Q |
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| T |
41213992 |
aataaaaaagtttttcaaacttaacttgcagaaaattgatatgccgtaaagattgaatcaaaacttggtacaaattgcatgcaaggtgtttgttgaattg |
41214091 |
T |
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| Q |
205 |
cccggacaaatcttttttgttttagtactgaattggaaattgaatactcgtgcatataatcaataaaaatatttttctataaactttgattcaataaatt |
304 |
Q |
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| T |
41214092 |
cccggacaaatcttttttgttttagtactgaattggaaattgaatactcgtgcatataatcaataaaaatatttttctataaactttgattcaataaatt |
41214191 |
T |
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| Q |
305 |
agattgtaatcaaattaactttctctagactctagttagtttgagtaattctagtttaattttttagattcgtttatattccatatggatttagaaaagt |
404 |
Q |
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| T |
41214192 |
agattgtaatcaaattaactttctctagactctagttagtttgagtaattctagtttaattttttagattcgtttatattccatatggatttagaaaagt |
41214291 |
T |
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| Q |
405 |
tttgtcgcatatgattcattcagaagcgttcagggtagtagaaggtgtagaaaaattcaaatttgggattgatcaaagaatctagcttgtattcacgcac |
504 |
Q |
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| T |
41214292 |
tttgtcgcatatgattcattcagaagcgttcaaggtagtagaaggtgtagaaaaattcaaatttgggattgatcaaagaatctagcttgtattcacgcac |
41214391 |
T |
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| Q |
505 |
cttc |
508 |
Q |
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|||| |
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| T |
41214392 |
cttc |
41214395 |
T |
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