View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2810_high_11 (Length: 507)
Name: NF2810_high_11
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 45121981 - 45121691
Alignment:
| Q |
1 |
ttacccttgatcattcttatatacattgcatgttatatgacattgtaattaaacgtattaaaatataaaagataataaacccgacatatttcaagaacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45121981 |
ttacccttgatcattcttatatacattgcatgttatatgacattgtaattaaacgtattaaaatataaaagataataaacccgacatatttcaagaacaa |
45121882 |
T |
|
| Q |
101 |
ttgaattaaattacataactacttctcataccataaagaagaatcaagaaccgaagccgcccagttcacatagcctttgatggctaagcaaccctcaaca |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45121881 |
ttgaattaaattacataactgcttctcataccataaagaagaatcaagaaccgaagccgcccagttcacatagcctttgatggctaagaaaccctcaaca |
45121782 |
T |
|
| Q |
201 |
tccttaatgtcaaacttcattttcagtgatctacaatcttcaaaaacccgagagccatccgatataggtatgaatttcaaattttcagata |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45121781 |
tccttaatgtcaaacttcattttcagtgatctacaatcttcaaaaacccgagagccatccgatataggtatgaatttcaaattttcagata |
45121691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 322 - 442
Target Start/End: Complemental strand, 45121695 - 45121575
Alignment:
| Q |
322 |
agatatcacaaagttttatatcatcattaaacacttcaattgaaccaaaaatctgcacaacttttgacttttcttgaccaatgaatactgaaaatatctc |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45121695 |
agatatcacaaagttttatatcatcattaaacacttcaattgaaccaaaaatctgcacaacttttgacttttcttgaccaatgaatactgaaaatatctc |
45121596 |
T |
|
| Q |
422 |
aacaacagtagatgaccatgg |
442 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
45121595 |
aacaacagtagatgaccatgg |
45121575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 45122693 - 45122628
Alignment:
| Q |
13 |
attcttatatacattgcatgttatatgacattgtaattaaacgtattaaaatataaaagataataa |
78 |
Q |
| |
|
|||||||||||||| ||||||||||||||| || ||||||| ||||| |||||||||||||||||| |
|
|
| T |
45122693 |
attcttatatacatcgcatgttatatgacaatgcaattaaatgtattgaaatataaaagataataa |
45122628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 45122750 - 45122692
Alignment:
| Q |
6 |
cttgatcattcttatatacattgcatgttatatgacattgtaattaaacgtattaaaat |
64 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||| ||||||| ||||| |||| |
|
|
| T |
45122750 |
cttgatcattcttatatactttgcatgttttatgacattgcaattaaatgtattgaaat |
45122692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University