View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_high_12 (Length: 503)
Name: NF2810_high_12
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 464; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 20 - 487
Target Start/End: Original strand, 38568051 - 38568518
Alignment:
| Q |
20 |
gcagcttttgcataagcagtttgacctttagaagccatcctgcctatgattacagccatggcagcacccgacacaacaagaagtggaagtgttgacatca |
119 |
Q |
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| T |
38568051 |
gcagcttttgcataagcagtttgacctttagaagccatcctgcctatgattacagccatggcagcacccgacacaacaagaagtggaagtgttgacatca |
38568150 |
T |
|
| Q |
120 |
atacaacagtaagaagccatcctctgctaaatgctatcacaaaaccgccaacaaatgttgctattagctgcagaaatttcccaacctgttttttcaaaca |
219 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38568151 |
atacaacagtaagaagccatcctctggtaaatgctatcacaaaaccgccaacaaatgttgctattagctgcagaaatttcccaacctgttttttcaaaca |
38568250 |
T |
|
| Q |
220 |
taaaatgaaaccttcattcagaaaaataaattcaaagctatgtagtagacacttcacattaaatttgtgtccggtgtccaaacgacactaatatgcgatt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38568251 |
taaaatgaaaccttcattcagaaaaataaattcaaagctatgtagtagacacttcacattaaatttgtgtccggtgtccaaacgacactaatatgcgatt |
38568350 |
T |
|
| Q |
320 |
acattcaattattctatttttcaaattactactagtattgacgtactgtgtttggtgtccgtgctcgtggttcatagattcaaagtaaccatttactcca |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38568351 |
acattcaattattctatttttcaaattactactagtattgacgtactgtgtttggtgtccgtgctcgtggttcatagattcaaagtaaccatttactcca |
38568450 |
T |
|
| Q |
420 |
aaatcatattttacattcaactctaaaattcataccttctcacccatggcatcttgaataagaacagt |
487 |
Q |
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| T |
38568451 |
aaatcatattttacattcaactctaaaattcataccttctcacccatggcatcttgaataagaacagt |
38568518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 38526906 - 38527125
Alignment:
| Q |
16 |
atgtgcagcttttgcataagcagtttgacctttagaagccatcctgcctatgattacagccatggcagcacccgacacaacaagaagtggaagtgttgac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
38526906 |
atgtgcagcttttgcataagcagtttgacctttagaagccattctgcctatgataacagccatggcagcacctgacacaacaagaaatggaagtgttgac |
38527005 |
T |
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| Q |
116 |
atcaatacaacagtaagaagccatcctctgctaaatgctatcacaaaaccgccaacaaatgttgctattagctgcagaaatttcccaacctgttttttca |
215 |
Q |
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|||| ||||||||||||||||| ||| | ||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38527006 |
atcataacaacagtaagaagccacccttttgtaaatgctatcacaaaacccccaataaatgttgctattagctgcagaaacttcccaacctgttttttca |
38527105 |
T |
|
| Q |
216 |
aacataaaatgaaaccttca |
235 |
Q |
| |
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|||| ||||| ||||||||| |
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| T |
38527106 |
aacacaaaattaaaccttca |
38527125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 448 - 487
Target Start/End: Original strand, 38527178 - 38527217
Alignment:
| Q |
448 |
ttcataccttctcacccatggcatcttgaataagaacagt |
487 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
38527178 |
ttcataccttctcacccatggcatcttgaataagaacagt |
38527217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 451 - 487
Target Start/End: Complemental strand, 51198113 - 51198077
Alignment:
| Q |
451 |
ataccttctcacccatggcatcttgaataagaacagt |
487 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
51198113 |
ataccttctcacccatggcatcttgaataagaacagt |
51198077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 488
Target Start/End: Original strand, 29938485 - 29938522
Alignment:
| Q |
451 |
ataccttctcacccatggcatcttgaataagaacagtg |
488 |
Q |
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|||||||||| ||||||||||||| ||||||||||||| |
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| T |
29938485 |
ataccttctcccccatggcatctttaataagaacagtg |
29938522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 451 - 487
Target Start/End: Complemental strand, 51144458 - 51144422
Alignment:
| Q |
451 |
ataccttctcacccatggcatcttgaataagaacagt |
487 |
Q |
| |
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|||||||||||||||||||||| | |||||||||||| |
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| T |
51144458 |
ataccttctcacccatggcatccttaataagaacagt |
51144422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 484
Target Start/End: Original strand, 49738535 - 49738568
Alignment:
| Q |
451 |
ataccttctcacccatggcatcttgaataagaac |
484 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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| T |
49738535 |
ataccttctctcccatggcatcttgaataagaac |
49738568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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