View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2810_high_14 (Length: 469)
Name: NF2810_high_14
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_high_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 9 - 261
Target Start/End: Original strand, 12184048 - 12184301
Alignment:
| Q |
9 |
gaagaatatataaggaacaacttgtgaatttgaaagtctagggtctaataaaatgagacctnnnnnnntacagtgatacatttagtataatatacgtaat |
108 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
12184048 |
gaagaaaatataaggaacaacttgtgaatttgaaagtctagggtctaataaaatgagacctaaaaaa-tacagtgatccatttagtataatatacgtaat |
12184146 |
T |
|
| Q |
109 |
taataaagtatgcgactgcatgtgttagttgggtttcttttttaaacggcatgaacttc--nnnnnnnnnaggggaaacgggcatgaacttttgtggtaa |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12184147 |
taataaagtatgcgactgcatgtgttagttgggtttcttttttaaacggcatgaacttctttttttttttaggggaaacgggcatgaacttttgtggtaa |
12184246 |
T |
|
| Q |
207 |
atatgatcaaatcaaatattgaacatatatgatcctttttattactcttgaacct |
261 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12184247 |
atatgatcaaatcaaatattaaacatatatgatcctttttattactcttgaacct |
12184301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 322 - 453
Target Start/End: Original strand, 12184362 - 12184493
Alignment:
| Q |
322 |
gatcacagtaagtactcnnnnnnnacagaaagaccgtaagtactatagttttagaatgcaatcagaaagtaagcaagtacgaacagtactaagaggccgg |
421 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12184362 |
gatcacagtaagtactctttttttacagaaagaccgtaagtactatagttttagaatgcaatcagaaagtaagcaagtacgaacagtactaagacgccgg |
12184461 |
T |
|
| Q |
422 |
tggtaatgacataggtttttgctactacttag |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
12184462 |
tggtaatgacataggtttttgctactacttag |
12184493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University