View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_high_16 (Length: 464)
Name: NF2810_high_16
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 12 - 449
Target Start/End: Original strand, 54807274 - 54807715
Alignment:
| Q |
12 |
atgaaaaggaaaataagtccatgaagctcgattgtaattatactgtgtcaattttgttcaattttatattaataaatttctcaataaagttggctaagta |
111 |
Q |
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| T |
54807274 |
atgaaaaggaaaataagtccatgaagctcgattgtaattatattgtgtcaattttgttcaattttatattaataaatttctcaataaagttggctaagta |
54807373 |
T |
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| Q |
112 |
gcaaaagggacaaatctccaattctgaccagatatattatctgtacgattcaatcgttaattttaaaaaccaaatgtagatgccaaaaagaaaggataag |
211 |
Q |
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| T |
54807374 |
gcaaaagggacaaatctccaattctgaccagatatattatctgtacgattcaatcgttaattttaaaaaccaaatgtagatgccaaaaagaaaggataag |
54807473 |
T |
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| Q |
212 |
gacaactgggaaagagattttgatagtttgtaagctacattaagttcaaacttatgtgacgcgataaacctaaacaacttattataaagcattcaatcta |
311 |
Q |
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| T |
54807474 |
gacaactgggaaagagattttgatagtttgtaagctacattaagttcaaacttatgtgacgcgataaacctaaacaacttattataaagcattcaatcta |
54807573 |
T |
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| Q |
312 |
attttgttgagcacaacgcttcatattgttatctcaatatgaatacgacacaggagtaagagtacaataatgat----nnnnnnnngtataatttcagtt |
407 |
Q |
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| T |
54807574 |
attttgttgagcacaacgcttcatattgttatctcaatatgaatacgacacaggaataagagtacaataatgataaaaaaaaaaaggtataatttcagtt |
54807673 |
T |
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| Q |
408 |
cattctaaatgtaaattttttgacattattatctgattctgt |
449 |
Q |
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| T |
54807674 |
cattctaaatgtaaattttttgacattattatctgattctgt |
54807715 |
T |
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