View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_high_17 (Length: 456)
Name: NF2810_high_17
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 447
Target Start/End: Original strand, 40869334 - 40869763
Alignment:
| Q |
18 |
atgtagctatctaatatcattttatcaaggtaagaatgtgccatagggtctgtaatctgatatcgtacatnnnnnnnngcattaactggatttcttgatc |
117 |
Q |
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| T |
40869334 |
atgtagctatctaatatcattttatcaaggtaagaatgtgccatagggtctgtaatctgatatcgtacataaagaaaagcattaactggatttcttgatc |
40869433 |
T |
|
| Q |
118 |
cttattagcagttatttgctttccctgaaactcaaactgatttatgctctgtaagatccaacagtattgtgttctaagaattttcacctgtgaaaaagag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40869434 |
cttattagcagttatttgctttccctgaaactcaaactgatttatgctctgtaagatccaacagtattgtgttctaagaattttcacctgtgaaaaagag |
40869533 |
T |
|
| Q |
218 |
ttgataaaatgaattatcactcattgattttatgctagattagacacttatttatacgagacactgagcaactcattcttcaaatggaccaattatcctt |
317 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40869534 |
ttgataaaatgaattatcactcgttgattttatgctagattagacacttatttatacgagacactgagcaactcattcttcaaatggaccaattatcctt |
40869633 |
T |
|
| Q |
318 |
cataagtagatccagaacttagggggaaccaatctggactatctgcagcaccaactggatccttttgtttcttcacatccttagaaattaaccatcattc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40869634 |
cataagtagatccagaacttagggggaaccaatctggactatctgcagcaccaactggatccttttgtttcttcacatccttagaaattaaccatcattc |
40869733 |
T |
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| Q |
418 |
catctccatcctacaacccaccattcatct |
447 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
40869734 |
catctccatcctacaacccaccattcatct |
40869763 |
T |
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